Variant report

Variant	rs10087272
Chromosome Location	chr8:60834933-60834934
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10091969	0.81[AFR][1000 genomes]
rs10108881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28606619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7007572	1.00[AMR][1000 genomes]
rs73257564	1.00[AMR][1000 genomes]
rs73257587	1.00[AMR][1000 genomes]
rs73684447	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73684456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60833600-60835000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr8:60833800-60835000	Enhancers	NHDF-Ad	bronchial
3	chr8:60834000-60835000	Enhancers	Colon Smooth Muscle	Colon
4	chr8:60834000-60835000	Enhancers	Stomach Smooth Muscle	stomach
5	chr8:60834200-60835200	Weak transcription	Primary B cells from cord blood	blood
6	chr8:60834200-60835200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr8:60834200-60835600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr8:60834800-60835000	Enhancers	Fetal Stomach	stomach
9	chr8:60834800-60835000	Enhancers	Rectal Smooth Muscle	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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