Variant report

Variant	rs73684456
Chromosome Location	chr8:60845531-60845532
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10087272	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10091969	0.81[AFR][1000 genomes]
rs10108881	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28606619	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28631873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7007572	1.00[AMR][1000 genomes]
rs73257564	1.00[AMR][1000 genomes]
rs73257587	1.00[AMR][1000 genomes]
rs73684447	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3393802	chr8:60845507-60845727	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60843200-60846000	Enhancers	Colon Smooth Muscle	Colon
2	chr8:60844000-60845800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:60844400-60846000	Enhancers	NHLF	lung
4	chr8:60845000-60848400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr8:60845400-60846000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:60845400-60846200	Enhancers	Stomach Smooth Muscle	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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