Variant report

Variant	rs10087278
Chromosome Location	chr8:86314855-86314856
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86313626..86315868-chr8:86376450..86379143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253549	Chromatin interaction

Extended variants
information (count: 54 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10088136	0.83[EUR][1000 genomes]
rs10091566	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10095352	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10097917	0.84[ASN][1000 genomes]
rs10111039	0.88[EUR][1000 genomes]
rs11261474	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11985029	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11985733	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550814	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13252971	0.93[ASN][1000 genomes]
rs13255540	0.83[EUR][1000 genomes]
rs13273654	0.89[ASN][1000 genomes]
rs1389245	0.82[EUR][1000 genomes]
rs1389247	0.83[EUR][1000 genomes]
rs1390712	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1472360	0.81[ASN][1000 genomes]
rs1493302	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1532423	0.89[ASN][1000 genomes]
rs1532424	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1543852	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1908075	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs20571	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2072696	0.83[ASN][1000 genomes]
rs2173044	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2307075	0.89[EUR][1000 genomes]
rs2403105	0.83[EUR][1000 genomes]
rs2548281	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2645053	0.82[ASN][1000 genomes]
rs3758076	0.92[EUR][1000 genomes]
rs3758077	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4566	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66498753	0.81[ASN][1000 genomes]
rs6988475	0.91[EUR][1000 genomes]
rs6997458	0.89[ASN][1000 genomes]
rs7000950	0.92[ASN][1000 genomes]
rs703	0.86[EUR][1000 genomes]
rs713488	0.83[EUR][1000 genomes]
rs713489	0.83[EUR][1000 genomes]
rs725605	0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7824715	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9286249	0.91[EUR][1000 genomes]
rs931505	0.83[EUR][1000 genomes]
rs955007	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9969643	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9987281	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
6	esv1804888	chr8:86263098-86986703	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv831377	chr8:86263107-86444141	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1028148	chr8:86310570-86553130	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
9	esv2761206	chr8:86310582-86468868	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10087278	C8orf59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86285200-86315400	Weak transcription	Fetal Intestine Small	intestine
2	chr8:86310800-86315400	Weak transcription	Brain Germinal Matrix	brain
3	chr8:86313000-86315000	Weak transcription	Psoas Muscle	Psoas
4	chr8:86313800-86315800	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr8:86314400-86315600	Enhancers	Adipose Nuclei	Adipose
6	chr8:86314400-86315800	Enhancers	Liver	Liver
7	chr8:86314600-86315200	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:86314600-86315600	Weak transcription	Fetal Lung	lung
9	chr8:86314800-86315200	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr8:86314800-86316000	Enhancers	Fetal Intestine Large	intestine

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