Variant report

Variant	rs10097917
Chromosome Location	chr8:86260295-86260296
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86260251..86261829-chr8:86265124..86266765,2	K562	blood:

Extended variants
information (count: 50 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10087278	0.84[ASN][1000 genomes]
rs10091566	0.84[ASN][1000 genomes]
rs10091582	0.84[ASN][1000 genomes]
rs10099251	0.84[ASN][1000 genomes]
rs10107686	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10110461	0.80[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs10111971	0.84[ASN][1000 genomes]
rs1032551	0.83[AMR][1000 genomes]
rs11261474	0.88[ASN][1000 genomes]
rs11985029	0.83[ASN][1000 genomes]
rs11985733	0.83[ASN][1000 genomes]
rs12541299	0.83[ASN][1000 genomes]
rs12544332	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12550814	0.88[ASN][1000 genomes]
rs13252971	0.89[ASN][1000 genomes]
rs13273654	0.85[ASN][1000 genomes]
rs1390712	0.88[ASN][1000 genomes]
rs1493302	0.84[ASN][1000 genomes]
rs1496529	0.81[ASN][1000 genomes]
rs1496530	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1496531	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1496532	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1496533	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1532423	0.85[ASN][1000 genomes]
rs1532424	0.89[ASN][1000 genomes]
rs1543852	0.83[ASN][1000 genomes]
rs1553016	0.84[ASN][1000 genomes]
rs1553017	0.84[ASN][1000 genomes]
rs1809819	0.82[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs1908075	0.82[ASN][1000 genomes]
rs1995057	0.89[ASN][1000 genomes]
rs20571	0.84[ASN][1000 genomes]
rs2173044	0.88[ASN][1000 genomes]
rs2220972	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2279700	0.81[ASN][1000 genomes]
rs2291787	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28374336	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs35558766	0.84[ASN][1000 genomes]
rs6605613	0.84[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs6997458	0.85[ASN][1000 genomes]
rs7000950	0.83[ASN][1000 genomes]
rs725605	0.89[ASN][1000 genomes]
rs7824715	0.89[ASN][1000 genomes]
rs7826511	0.90[ASN][1000 genomes]
rs9987281	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv1022463	chr8:86257031-86547831	Enhancers Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10097917	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL
rs10097917	C8orf59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86244800-86263600	Weak transcription	Fetal Intestine Large	intestine
2	chr8:86257600-86261800	Weak transcription	Psoas Muscle	Psoas
3	chr8:86257600-86261800	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr8:86257600-86263000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:86257600-86264400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr8:86257800-86261800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:86258800-86261600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr8:86259400-86263600	Weak transcription	Fetal Intestine Small	intestine
9	chr8:86259800-86261600	Weak transcription	Fetal Lung	lung
10	chr8:86260000-86263200	Weak transcription	Left Ventricle	heart

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