Variant report

Variant	rs7826511
Chromosome Location	chr8:86247018-86247019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10091582	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10097917	0.90[ASN][1000 genomes]
rs10099251	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10107686	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10110461	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10111971	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11261469	0.82[ASN][1000 genomes]
rs11261471	0.86[ASN][1000 genomes]
rs11261474	0.80[ASN][1000 genomes]
rs12114575	0.93[EUR][1000 genomes]
rs12541299	0.91[ASN][1000 genomes]
rs12541445	0.86[ASN][1000 genomes]
rs12543256	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12544332	0.93[ASN][1000 genomes]
rs13252971	0.80[ASN][1000 genomes]
rs1390711	0.80[ASN][1000 genomes]
rs1496531	0.93[ASN][1000 genomes]
rs1496532	0.93[ASN][1000 genomes]
rs1496533	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1532424	0.80[ASN][1000 genomes]
rs1553016	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1553017	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1809819	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1845891	0.84[ASN][1000 genomes]
rs1845892	0.81[ASN][1000 genomes]
rs1908762	0.84[ASN][1000 genomes]
rs1995057	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1995058	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2006767	0.82[ASN][1000 genomes]
rs2132590	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2220972	0.92[ASN][1000 genomes]
rs2279700	0.89[ASN][1000 genomes]
rs2279701	0.84[ASN][1000 genomes]
rs2291787	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28374336	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28439950	0.81[ASN][1000 genomes]
rs35558766	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3808539	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4609189	0.84[ASN][1000 genomes]
rs4617148	0.84[ASN][1000 genomes]
rs4739698	0.81[ASN][1000 genomes]
rs4740047	0.84[ASN][1000 genomes]
rs6605613	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6993316	0.84[ASN][1000 genomes]
rs7001359	0.86[ASN][1000 genomes]
rs7011926	0.80[ASN][1000 genomes]
rs725605	0.80[ASN][1000 genomes]
rs7824715	0.80[ASN][1000 genomes]
rs7835303	0.93[EUR][1000 genomes]
rs7839129	0.82[ASN][1000 genomes]
rs903895	0.93[EUR][1000 genomes]
rs903897	0.93[EUR][1000 genomes]
rs9329908	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7826511	C8orf59	Cis_1M	lymphoblastoid	RTeQTL
rs7826511	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86238800-86254800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:86240400-86248600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr8:86244800-86263600	Weak transcription	Fetal Intestine Large	intestine

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