Variant report

Variant	rs7835303
Chromosome Location	chr8:86226788-86226789
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 63 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10090196	0.80[ASN][1000 genomes]
rs10091582	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10099251	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10107686	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10110461	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10111971	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1014303	0.99[ASN][1000 genomes]
rs11261472	0.99[ASN][1000 genomes]
rs11989660	0.99[ASN][1000 genomes]
rs12114575	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12541299	0.81[ASN][1000 genomes]
rs12543256	0.89[EUR][1000 genomes]
rs1303806	0.92[ASN][1000 genomes]
rs1303807	0.92[ASN][1000 genomes]
rs13259399	0.83[ASN][1000 genomes]
rs1390711	0.93[ASN][1000 genomes]
rs1496529	0.81[ASN][1000 genomes]
rs1496530	0.89[ASN][1000 genomes]
rs1496533	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1553015	0.99[ASN][1000 genomes]
rs1553016	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1553017	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs16913721	0.88[ASN][1000 genomes]
rs1809819	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1995056	0.92[ASN][1000 genomes]
rs1995057	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1995058	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2132590	0.89[EUR][1000 genomes]
rs2291787	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2403104	0.96[ASN][1000 genomes]
rs28374336	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28494527	0.85[ASN][1000 genomes]
rs28677919	0.80[ASN][1000 genomes]
rs35285802	0.87[ASN][1000 genomes]
rs35558766	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3808539	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4739700	0.88[ASN][1000 genomes]
rs4739702	0.99[ASN][1000 genomes]
rs4740044	0.83[ASN][1000 genomes]
rs4740048	0.96[ASN][1000 genomes]
rs4740049	0.92[ASN][1000 genomes]
rs62527225	0.81[ASN][1000 genomes]
rs6605613	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs67573812	0.81[ASN][1000 genomes]
rs6987641	0.82[ASN][1000 genomes]
rs6990449	0.81[ASN][1000 genomes]
rs6990452	0.81[ASN][1000 genomes]
rs6993387	0.87[ASN][1000 genomes]
rs7004871	0.92[ASN][1000 genomes]
rs7011926	0.93[ASN][1000 genomes]
rs7818163	0.88[ASN][1000 genomes]
rs7826511	0.93[EUR][1000 genomes]
rs7833737	0.94[ASN][1000 genomes]
rs7835882	0.83[ASN][1000 genomes]
rs7837275	0.91[ASN][1000 genomes]
rs903895	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs903896	0.99[ASN][1000 genomes]
rs903897	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2761442	chr8:86201657-86230641	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7835303	C8orf59	Cis_1M	lymphoblastoid	RTeQTL
rs7835303	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86217600-86229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr8:86226600-86227400	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links