Variant report

Variant	rs35558766
Chromosome Location	chr8:86228277-86228278
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 78 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:73)

rs_ID	r²[population]
rs10091582	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10097917	0.84[ASN][1000 genomes]
rs10099251	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10106970	0.82[ASN][1000 genomes]
rs10107686	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10110461	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10111971	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1014303	0.81[ASN][1000 genomes]
rs1021583	0.81[ASN][1000 genomes]
rs11261469	0.89[ASN][1000 genomes]
rs11261471	0.93[ASN][1000 genomes]
rs11261472	0.81[ASN][1000 genomes]
rs11989660	0.81[ASN][1000 genomes]
rs12114575	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12541299	0.98[ASN][1000 genomes]
rs12541445	0.93[ASN][1000 genomes]
rs12543256	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12544332	0.89[ASN][1000 genomes]
rs12546106	0.83[ASN][1000 genomes]
rs12550160	0.82[ASN][1000 genomes]
rs12679400	0.84[ASN][1000 genomes]
rs1496531	0.89[ASN][1000 genomes]
rs1496532	0.89[ASN][1000 genomes]
rs1496533	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1553015	0.81[ASN][1000 genomes]
rs1553016	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1553017	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16913681	0.82[ASN][1000 genomes]
rs17740658	0.82[ASN][1000 genomes]
rs1809819	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1845891	0.90[ASN][1000 genomes]
rs1845892	0.88[ASN][1000 genomes]
rs1908762	0.90[ASN][1000 genomes]
rs1995057	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995058	0.96[EUR][1000 genomes]
rs2006767	0.89[ASN][1000 genomes]
rs2132589	0.82[ASN][1000 genomes]
rs2132590	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2220972	0.88[ASN][1000 genomes]
rs2279700	0.96[ASN][1000 genomes]
rs2279701	0.91[ASN][1000 genomes]
rs2291786	0.82[ASN][1000 genomes]
rs2291787	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28374336	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28439950	0.88[ASN][1000 genomes]
rs28564613	0.84[ASN][1000 genomes]
rs3808539	0.97[EUR][1000 genomes]
rs4150974	0.82[ASN][1000 genomes]
rs4150977	0.82[ASN][1000 genomes]
rs4609189	0.90[ASN][1000 genomes]
rs4617148	0.90[ASN][1000 genomes]
rs4739698	0.88[ASN][1000 genomes]
rs4739702	0.81[ASN][1000 genomes]
rs4740045	0.84[ASN][1000 genomes]
rs4740047	0.90[ASN][1000 genomes]
rs4740048	0.82[ASN][1000 genomes]
rs6605610	0.82[ASN][1000 genomes]
rs6605611	0.82[ASN][1000 genomes]
rs6605613	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6993316	0.90[ASN][1000 genomes]
rs6994113	0.84[ASN][1000 genomes]
rs7001359	0.93[ASN][1000 genomes]
rs7011001	0.84[ASN][1000 genomes]
rs7821629	0.82[ASN][1000 genomes]
rs7826511	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7827175	0.81[ASN][1000 genomes]
rs7829240	0.82[ASN][1000 genomes]
rs7835303	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7839129	0.89[ASN][1000 genomes]
rs903895	0.97[EUR][1000 genomes]
rs903896	0.81[ASN][1000 genomes]
rs903897	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9329908	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018483	chr8:86142258-86547831	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv1024759	chr8:86162507-86361533	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv539659	chr8:86162507-86361533	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv971674	chr8:86187966-86338484	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2761442	chr8:86201657-86230641	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs35558766	C8orf59	Cis_1M	lymphoblastoid	RTeQTL
rs35558766	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL
rs35558766	LRRCC1	cis	Esophagus Mucosa	GTEx

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86217600-86229200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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