Variant report

Variant	rs4150974
Chromosome Location	chr8:86127464-86127465
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:86127380-86128003	MCF10A-Er-Src	breast:	n/a	n/a
2	POLR2A	chr8:86127432-86127477	HepG2	liver:	n/a	n/a
3	POLR2A	chr8:86125551-86129403	K562	blood:	n/a	n/a
4	POLR2A	chr8:86127377-86127562	MCF10A-Er-Src	breast:	n/a	n/a
5	POLR2A	chr8:86127416-86128566	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:86125394..86127855-chr8:86131977..86134501,2	MCF-7	breast:
2	chr8:86089162..86091404-chr8:86126321..86127950,2	MCF-7	breast:

Variant related genes	Relation type
C8orf59	TF binding region
ENSG00000260493	Chromatin interaction
ENSG00000185015	Chromatin interaction
ENSG00000176731	Chromatin interaction
ENSG00000133740	Chromatin interaction
ENSG00000254208	Chromatin interaction

Extended variants
information (count: 130 )
Associated
traits (count: 15 )

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs10088120	0.95[JPT][hapmap];0.96[MEX][hapmap];0.93[TSI][hapmap]
rs10090196	0.83[CHB][hapmap];0.91[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap];0.80[AFR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10091577	0.81[EUR][1000 genomes]
rs10091582	0.82[ASN][1000 genomes]
rs10091710	0.82[EUR][1000 genomes]
rs10099251	0.82[ASN][1000 genomes]
rs10100442	0.89[JPT][hapmap];0.93[TSI][hapmap]
rs10106970	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10110461	0.82[ASN][1000 genomes]
rs10111971	0.82[ASN][1000 genomes]
rs1021583	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11261468	0.85[JPT][hapmap];0.84[MEX][hapmap]
rs11261469	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11261471	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11261474	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs12541299	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12541445	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12543256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs12544332	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs12546106	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12550160	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12679400	0.88[ASN][1000 genomes]
rs1303806	0.86[JPT][hapmap]
rs13252971	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs13259399	0.83[CHB][hapmap];0.91[JPT][hapmap];0.83[MEX][hapmap];0.85[TSI][hapmap];0.81[ASN][1000 genomes]
rs13259464	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13269031	0.81[EUR][1000 genomes]
rs13269739	0.95[JPT][hapmap]
rs1390711	0.86[JPT][hapmap]
rs1496529	0.82[JPT][hapmap]
rs1496530	0.82[JPT][hapmap]
rs1496531	0.86[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap]
rs1496532	0.86[CHB][hapmap];0.98[CHD][hapmap];0.91[JPT][hapmap]
rs1532424	0.82[CHB][hapmap];0.81[CHD][hapmap];0.82[JPT][hapmap]
rs1553015	0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs1553016	0.82[ASN][1000 genomes]
rs1553017	0.82[ASN][1000 genomes]
rs16913681	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16913721	0.84[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.82[EUR][1000 genomes]
rs17740658	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1845891	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1845892	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1908762	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1995056	0.81[JPT][hapmap];0.83[MEX][hapmap];0.81[TSI][hapmap]
rs1995057	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs1995058	0.86[JPT][hapmap]
rs2006767	0.93[ASW][hapmap];0.84[CEU][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.95[TSI][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2132589	0.87[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];0.92[MEX][hapmap];0.91[MKK][hapmap];0.93[TSI][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2132590	0.89[ASN][1000 genomes]
rs2278459	0.85[JPT][hapmap];0.92[MEX][hapmap];0.86[TSI][hapmap]
rs2279700	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2279701	0.95[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2291786	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2291787	0.91[CHB][hapmap];0.98[CHD][hapmap];0.95[JPT][hapmap]
rs2403083	0.91[CHB][hapmap];0.95[JPT][hapmap];0.84[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2403084	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2403085	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2403086	0.91[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2403088	0.85[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs2403104	0.86[JPT][hapmap];0.80[MEX][hapmap];0.83[TSI][hapmap]
rs28374336	0.82[ASN][1000 genomes]
rs28377260	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28439950	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28564613	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28677919	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs2896452	0.85[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs2896454	0.95[JPT][hapmap];0.87[MEX][hapmap];0.93[TSI][hapmap]
rs34103685	0.95[JPT][hapmap];0.96[MEX][hapmap]
rs35558766	0.82[ASN][1000 genomes]
rs3779899	0.95[JPT][hapmap];0.92[MEX][hapmap];0.93[TSI][hapmap]
rs3779901	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3808538	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.90[TSI][hapmap];0.80[ASN][1000 genomes]
rs3808539	0.86[JPT][hapmap]
rs4150865	0.81[EUR][1000 genomes]
rs4150867	0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs4150868	0.95[JPT][hapmap];0.82[EUR][1000 genomes]
rs4150869	0.90[JPT][hapmap];0.82[EUR][1000 genomes]
rs4150884	0.83[EUR][1000 genomes]
rs4150893	0.93[ASW][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.95[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150897	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4150909	0.83[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap];0.86[ASN][1000 genomes]
rs4150942	0.85[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4150944	0.83[CHB][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs4150962	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4150964	0.87[ASW][hapmap];0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4150977	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4609189	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4617148	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4739698	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4739700	0.83[CHB][hapmap];0.91[JPT][hapmap];0.88[MEX][hapmap];0.85[TSI][hapmap]
rs4740043	0.81[JPT][hapmap]
rs4740044	0.83[CHB][hapmap];0.91[JPT][hapmap];0.80[ASN][1000 genomes]
rs4740045	0.93[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];0.95[TSI][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4740047	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4740049	0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs62527173	0.82[EUR][1000 genomes]
rs6605610	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6605611	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6605613	0.82[ASN][1000 genomes]
rs6605624	0.85[JPT][hapmap];0.88[MEX][hapmap];0.86[TSI][hapmap]
rs67573812	0.82[ASN][1000 genomes]
rs6987641	0.80[ASN][1000 genomes]
rs6990449	0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs6990452	0.82[ASN][1000 genomes]
rs6993316	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6993387	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs6994113	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7001359	0.84[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7004871	0.82[EUR][1000 genomes]
rs7008772	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs7011001	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7011926	0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs7015758	0.95[JPT][hapmap]
rs7818163	0.83[CHB][hapmap];0.91[JPT][hapmap];0.87[MEX][hapmap];0.85[TSI][hapmap]
rs7821629	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826589	0.81[JPT][hapmap]
rs7827175	0.87[ASW][hapmap];0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];0.95[TSI][hapmap];0.93[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7829050	0.95[JPT][hapmap]
rs7829144	0.85[JPT][hapmap];0.92[MEX][hapmap]
rs7829240	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7839129	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7841142	0.85[JPT][hapmap];0.83[MEX][hapmap]
rs7842013	0.82[EUR][1000 genomes]
rs903895	0.86[JPT][hapmap]
rs903896	0.86[JPT][hapmap];0.84[MEX][hapmap];0.81[TSI][hapmap]
rs903897	0.86[JPT][hapmap]
rs9329908	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv971329	chr8:86094967-86183119	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:15)

SNP	Gene	Cis/trans	Tissue	Source
rs4150974	C8orf59	cis	parietal	SCAN
rs4150974	CA13	cis	multi-tissue	Pritchard
rs4150974	TBC1D9	trans	parietal	SCAN
rs4150974	CA13	cis	lymphoblastoid	seeQTL
rs4150974	LRRCC1	cis	Artery Tibial	GTEx
rs4150974	CA13	cis	cerebellum	SCAN
rs4150974	CA13	cis	Lymphoblastoid	GTEx
rs4150974	LRRCC1	cis	cerebellum	SCAN
rs4150974	LRRCC1	cis	normal skin	skin_eQTL
rs4150974	C8orf59	Cis_1M	lymphoblastoid	RTeQTL
rs4150974	DCAF4L2	cis	cerebellum	SCAN
rs4150974	LRRCC1	cis	Esophagus Mucosa	GTEx
rs4150974	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL
rs4150974	LRRCC1	cis	parietal	SCAN
rs4150974	C8orf59	cis	cerebellum	SCAN

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:86090800-86127800	Weak transcription	Aorta	Aorta
2	chr8:86091000-86127800	Weak transcription	HSMMtube	muscle
3	chr8:86091000-86132000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:86101000-86127800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:86101200-86127800	Weak transcription	Spleen	Spleen
6	chr8:86101200-86131000	Weak transcription	HepG2	liver
7	chr8:86102600-86128200	Weak transcription	Fetal Brain Male	brain
8	chr8:86110400-86128200	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr8:86111000-86128000	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr8:86113000-86127800	Weak transcription	Esophagus	oesophagus
11	chr8:86113200-86127600	Weak transcription	Right Ventricle	heart
12	chr8:86113200-86131200	Weak transcription	Fetal Heart	heart
13	chr8:86113400-86128000	Weak transcription	Colon Smooth Muscle	Colon
14	chr8:86113400-86132000	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:86113600-86128000	Weak transcription	Brain Hippocampus Middle	brain
16	chr8:86114200-86131200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:86114400-86131200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:86114800-86130600	Strong transcription	Primary B cells from peripheral blood	blood
19	chr8:86118800-86127600	Weak transcription	Lung	lung
20	chr8:86118800-86127600	Weak transcription	Small Intestine	intestine
21	chr8:86118800-86128200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr8:86119200-86131400	Strong transcription	HUES48 Cell Line	embryonic stem cell
23	chr8:86119400-86130800	Strong transcription	HUES64 Cell Line	embryonic stem cell
24	chr8:86119400-86131200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:86120000-86127800	Weak transcription	Pancreas	Pancrea
26	chr8:86120200-86128000	Weak transcription	Ovary	ovary
27	chr8:86120200-86130800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr8:86120600-86131200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr8:86120800-86128200	Weak transcription	HSMM	muscle
30	chr8:86120800-86128800	Strong transcription	Brain Germinal Matrix	brain
31	chr8:86120800-86129000	Strong transcription	Fetal Muscle Trunk	muscle
32	chr8:86120800-86131200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr8:86120800-86131200	Strong transcription	Fetal Thymus	thymus
34	chr8:86121000-86129000	Strong transcription	Fetal Muscle Leg	muscle
35	chr8:86121000-86129400	Strong transcription	H1 Cell Line	embryonic stem cell
36	chr8:86121000-86129600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:86121000-86130200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
38	chr8:86121000-86130400	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr8:86121000-86131000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:86121400-86128600	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:86121400-86129000	Strong transcription	Fetal Intestine Large	intestine
42	chr8:86121400-86129800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr8:86121400-86131000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr8:86121600-86132200	Weak transcription	Gastric	stomach
45	chr8:86121800-86127800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr8:86122000-86131800	Weak transcription	Right Atrium	heart
47	chr8:86122600-86127600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr8:86122600-86128200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr8:86123200-86130800	Strong transcription	Rectal Mucosa Donor 29	rectum
50	chr8:86123400-86127600	Weak transcription	Brain Substantia Nigra	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links