Variant report

Variant	rs7826589
Chromosome Location	chr8:86015720-86015721
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10088120	0.85[JPT][hapmap]
rs10090196	0.91[JPT][hapmap]
rs1021583	0.81[JPT][hapmap]
rs11261468	0.95[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12543256	0.81[JPT][hapmap]
rs12546106	0.81[JPT][hapmap]
rs12550160	0.81[JPT][hapmap]
rs13259399	0.91[JPT][hapmap]
rs13269739	0.85[JPT][hapmap]
rs16913681	0.81[JPT][hapmap]
rs16913721	0.91[JPT][hapmap]
rs17740658	0.81[JPT][hapmap]
rs2006767	0.91[JPT][hapmap]
rs2132589	0.81[JPT][hapmap]
rs2278459	0.95[JPT][hapmap]
rs2291786	0.81[JPT][hapmap]
rs2403082	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2403083	0.86[JPT][hapmap]
rs2403085	0.86[JPT][hapmap]
rs2403086	0.86[JPT][hapmap]
rs2403087	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2403088	0.87[CHB][hapmap];0.95[JPT][hapmap];0.88[ASN][1000 genomes]
rs2403089	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2896452	0.95[JPT][hapmap]
rs2896454	0.85[JPT][hapmap]
rs34103685	0.85[JPT][hapmap];0.81[EUR][1000 genomes]
rs3779899	0.85[JPT][hapmap]
rs3779901	0.81[JPT][hapmap]
rs3808538	0.91[JPT][hapmap]
rs4150862	0.81[ASN][1000 genomes]
rs4150867	0.86[JPT][hapmap]
rs4150868	0.85[JPT][hapmap]
rs4150869	0.85[JPT][hapmap]
rs4150893	0.85[JPT][hapmap]
rs4150909	0.85[JPT][hapmap]
rs4150942	0.95[JPT][hapmap]
rs4150944	0.86[JPT][hapmap]
rs4150964	0.81[JPT][hapmap]
rs4150974	0.81[JPT][hapmap]
rs4150977	0.81[JPT][hapmap]
rs4609189	0.81[JPT][hapmap]
rs4739700	0.91[JPT][hapmap]
rs4740043	0.87[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs4740044	0.91[JPT][hapmap]
rs4740045	0.81[JPT][hapmap]
rs6605609	0.83[ASN][1000 genomes]
rs6605610	0.81[JPT][hapmap]
rs6605624	0.81[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs6605625	0.81[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs6986704	0.85[ASN][1000 genomes]
rs6990449	0.93[JPT][hapmap]
rs6993387	0.91[JPT][hapmap]
rs6994113	0.81[JPT][hapmap]
rs7008772	0.91[JPT][hapmap]
rs7015758	0.86[JPT][hapmap]
rs72682904	0.82[ASN][1000 genomes]
rs7818163	0.91[JPT][hapmap]
rs7827175	0.81[JPT][hapmap]
rs7829050	0.86[JPT][hapmap]
rs7829144	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7838900	0.81[AMR][1000 genomes]
rs7841142	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3481417	chr8:85279453-86145229	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv3481418	chr8:85279453-86145229	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1033160	chr8:86010643-86030560	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7826589	LRRCC1	Cis_1M	lymphoblastoid	RTeQTL
rs7826589	LRRCC1	cis	Esophagus Mucosa	GTEx
rs7826589	C8orf59	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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