Variant report

Variant	rs10087498
Chromosome Location	chr8:69666386-69666387
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17389700	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164198	1.00[CHB][hapmap]
rs7838605	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9886368	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890986	chr8:69647914-69704366	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
2	chr8:69662800-69667800	Enhancers	Fetal Lung	lung
3	chr8:69663200-69666800	Enhancers	NHLF	lung
4	chr8:69663600-69672200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:69664000-69666400	Weak transcription	HSMMtube	muscle
6	chr8:69664000-69670200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr8:69664800-69671200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:69665400-69666800	Enhancers	NHDF-Ad	bronchial
9	chr8:69665600-69666800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:69665800-69667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr8:69665800-69667000	Enhancers	HSMM	muscle
12	chr8:69666000-69666600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:69666000-69666800	Enhancers	Osteobl	bone
14	chr8:69666000-69667000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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