Variant report

Variant	rs7838605
Chromosome Location	chr8:69666889-69666890
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs10087498	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17389700	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2164198	1.00[CHB][hapmap]
rs9886368	1.00[CHB][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831349	chr8:69555461-69733515	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv465703	chr8:69641287-69814578	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv611462	chr8:69641287-69814578	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv890986	chr8:69647914-69704366	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69640200-69676800	Weak transcription	Aorta	Aorta
2	chr8:69662800-69667800	Enhancers	Fetal Lung	lung
3	chr8:69663600-69672200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr8:69664000-69670200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:69664800-69671200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr8:69665800-69667000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr8:69665800-69667000	Enhancers	HSMM	muscle
8	chr8:69666000-69667000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:69666400-69667000	Enhancers	HSMMtube	muscle
10	chr8:69666600-69672000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:69666800-69670200	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr8:69666800-69670200	Weak transcription	NHLF	lung
13	chr8:69666800-69670600	Weak transcription	Osteobl	bone
14	chr8:69666800-69671400	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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