Variant report

Variant	rs1008801
Chromosome Location	chr22:30872174-30872175
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:30794407..30796081-chr22:30871595..30874543,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100003	Chromatin interaction

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs1001409	1.00[ASN][1000 genomes]
rs11912737	1.00[ASN][1000 genomes]
rs11914168	1.00[JPT][hapmap]
rs12484688	1.00[JPT][hapmap]
rs13053262	1.00[ASN][1000 genomes]
rs13054004	1.00[ASN][1000 genomes]
rs13750	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs16988720	1.00[ASN][1000 genomes]
rs16988803	1.00[JPT][hapmap]
rs16988810	1.00[JPT][hapmap]
rs16988814	1.00[JPT][hapmap]
rs17670707	1.00[ASN][1000 genomes]
rs17670808	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17738527	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17738540	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1859479	1.00[ASN][1000 genomes]
rs1986969	0.95[ASN][1000 genomes]
rs2189835	1.00[ASN][1000 genomes]
rs2412989	1.00[ASN][1000 genomes]
rs2412990	1.00[ASN][1000 genomes]
rs35102600	0.95[ASN][1000 genomes]
rs35530794	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35841307	1.00[ASN][1000 genomes]
rs4602314	1.00[ASN][1000 genomes]
rs4820019	1.00[JPT][hapmap]
rs4820869	1.00[JPT][hapmap]
rs4820874	1.00[JPT][hapmap]
rs60308761	0.88[ASN][1000 genomes]
rs6518693	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6518695	1.00[ASN][1000 genomes]
rs7284873	1.00[ASN][1000 genomes]
rs7285878	1.00[ASN][1000 genomes]
rs7286523	1.00[ASN][1000 genomes]
rs7286807	0.95[ASN][1000 genomes]
rs7287003	0.95[ASN][1000 genomes]
rs7287135	1.00[ASN][1000 genomes]
rs7287596	1.00[ASN][1000 genomes]
rs7289277	1.00[ASN][1000 genomes]
rs7289820	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs7289828	1.00[ASN][1000 genomes]
rs7291870	1.00[ASN][1000 genomes]
rs7292573	1.00[ASN][1000 genomes]
rs737942	1.00[ASN][1000 genomes]
rs8136225	1.00[ASN][1000 genomes]
rs8136992	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs8137267	1.00[ASN][1000 genomes]
rs8137718	1.00[ASN][1000 genomes]
rs8138759	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8141108	1.00[ASN][1000 genomes]
rs8141286	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs8141318	1.00[ASN][1000 genomes]
rs8141428	1.00[ASN][1000 genomes]
rs8141671	1.00[ASN][1000 genomes]
rs886615	1.00[ASN][1000 genomes]
rs886616	1.00[ASN][1000 genomes]
rs886617	1.00[ASN][1000 genomes]
rs9306262	1.00[ASN][1000 genomes]
rs9606735	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9606736	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9606738	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9606739	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9606744	1.00[ASN][1000 genomes]
rs9606745	1.00[ASN][1000 genomes]
rs9606746	1.00[ASN][1000 genomes]
rs9606747	1.00[ASN][1000 genomes]
rs9606749	1.00[ASN][1000 genomes]
rs9608935	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608936	1.00[ASN][1000 genomes]
rs9608938	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9608940	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9608941	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9608942	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9608944	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs9608955	1.00[ASN][1000 genomes]
rs9608956	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs9608960	1.00[ASN][1000 genomes]
rs9608964	1.00[ASN][1000 genomes]
rs9608966	1.00[ASN][1000 genomes]
rs9608967	1.00[ASN][1000 genomes]
rs9608968	1.00[ASN][1000 genomes]
rs9608972	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829171	chr22:30598030-31043578	Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:30869400-30872800	Weak transcription	Liver	Liver
2	chr22:30871200-30873000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr22:30872000-30872800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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