Variant report
| Variant | rs35530794 |
|---|---|
| Chromosome Location | chr22:30874561-30874562 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr22:30873122..30874681-chr22:30883179..30885097,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:73)
| rs_ID | r2[population] |
|---|---|
| rs1001409 | 1.00[ASN][1000 genomes] |
| rs1008801 | 0.82[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11912737 | 1.00[ASN][1000 genomes] |
| rs13053262 | 1.00[ASN][1000 genomes] |
| rs13054004 | 1.00[ASN][1000 genomes] |
| rs13750 | 1.00[ASN][1000 genomes] |
| rs16988720 | 1.00[ASN][1000 genomes] |
| rs17670707 | 1.00[ASN][1000 genomes] |
| rs17670808 | 1.00[ASN][1000 genomes] |
| rs17738527 | 1.00[ASN][1000 genomes] |
| rs17738540 | 1.00[ASN][1000 genomes] |
| rs1859479 | 1.00[ASN][1000 genomes] |
| rs1986969 | 0.95[ASN][1000 genomes] |
| rs2189835 | 1.00[ASN][1000 genomes] |
| rs2412989 | 1.00[ASN][1000 genomes] |
| rs2412990 | 1.00[ASN][1000 genomes] |
| rs35102600 | 0.95[ASN][1000 genomes] |
| rs35841307 | 1.00[ASN][1000 genomes] |
| rs4602314 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs60308761 | 0.88[ASN][1000 genomes] |
| rs6518693 | 1.00[ASN][1000 genomes] |
| rs6518695 | 1.00[ASN][1000 genomes] |
| rs7284873 | 1.00[ASN][1000 genomes] |
| rs7285878 | 1.00[ASN][1000 genomes] |
| rs7286523 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7286807 | 0.95[ASN][1000 genomes] |
| rs7287003 | 0.95[ASN][1000 genomes] |
| rs7287135 | 1.00[ASN][1000 genomes] |
| rs7287596 | 1.00[ASN][1000 genomes] |
| rs7289277 | 1.00[ASN][1000 genomes] |
| rs7289820 | 1.00[ASN][1000 genomes] |
| rs7289828 | 1.00[ASN][1000 genomes] |
| rs7291870 | 1.00[ASN][1000 genomes] |
| rs7292573 | 1.00[ASN][1000 genomes] |
| rs737942 | 1.00[ASN][1000 genomes] |
| rs8136225 | 1.00[ASN][1000 genomes] |
| rs8136992 | 1.00[ASN][1000 genomes] |
| rs8137267 | 1.00[ASN][1000 genomes] |
| rs8137718 | 1.00[ASN][1000 genomes] |
| rs8138759 | 1.00[ASN][1000 genomes] |
| rs8141108 | 1.00[ASN][1000 genomes] |
| rs8141286 | 1.00[ASN][1000 genomes] |
| rs8141318 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs8141428 | 1.00[ASN][1000 genomes] |
| rs8141671 | 1.00[ASN][1000 genomes] |
| rs886615 | 1.00[ASN][1000 genomes] |
| rs886616 | 1.00[ASN][1000 genomes] |
| rs886617 | 1.00[ASN][1000 genomes] |
| rs9306262 | 1.00[ASN][1000 genomes] |
| rs9606735 | 1.00[ASN][1000 genomes] |
| rs9606736 | 1.00[ASN][1000 genomes] |
| rs9606738 | 1.00[ASN][1000 genomes] |
| rs9606739 | 1.00[ASN][1000 genomes] |
| rs9606744 | 1.00[ASN][1000 genomes] |
| rs9606745 | 1.00[ASN][1000 genomes] |
| rs9606746 | 1.00[ASN][1000 genomes] |
| rs9606747 | 1.00[ASN][1000 genomes] |
| rs9606749 | 1.00[ASN][1000 genomes] |
| rs9608935 | 0.91[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9608936 | 1.00[ASN][1000 genomes] |
| rs9608938 | 0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9608940 | 0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9608941 | 1.00[ASN][1000 genomes] |
| rs9608942 | 1.00[ASN][1000 genomes] |
| rs9608944 | 1.00[ASN][1000 genomes] |
| rs9608955 | 1.00[ASN][1000 genomes] |
| rs9608956 | 0.91[ASN][1000 genomes] |
| rs9608960 | 1.00[ASN][1000 genomes] |
| rs9608964 | 1.00[ASN][1000 genomes] |
| rs9608966 | 1.00[ASN][1000 genomes] |
| rs9608967 | 1.00[ASN][1000 genomes] |
| rs9608968 | 1.00[ASN][1000 genomes] |
| rs9608972 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829171 | chr22:30598030-31043578 | Active TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 66 gene(s) | inside rSNPs | diseases |
| 2 | nsv915818 | chr22:30708245-31346302 | Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 82 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr22:30872800-30881400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
