Variant report

Variant	rs10088284
Chromosome Location	chr8:9726566-9726567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17150856	1.00[EUR][1000 genomes]
rs17150869	1.00[EUR][1000 genomes]
rs2628145	1.00[MEX][hapmap]
rs28544392	1.00[EUR][1000 genomes]
rs55925951	1.00[EUR][1000 genomes]
rs56353052	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6980819	1.00[EUR][1000 genomes]
rs6993192	1.00[EUR][1000 genomes]
rs6998126	1.00[EUR][1000 genomes]
rs7001347	1.00[EUR][1000 genomes]
rs73534828	1.00[EUR][1000 genomes]
rs7824016	1.00[EUR][1000 genomes]
rs7842837	1.00[EUR][1000 genomes]
rs9329211	1.00[MEX][hapmap]
rs9886522	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv520485	chr8:9718278-9729939	Flanking Active TSS Weak transcription Enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9719800-9727400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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