Variant report

Variant	rs6980819
Chromosome Location	chr8:9688589-9688590
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:12)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:12 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:9617870..9618700-chr8:9688130..9689029,3	MCF-7	breast:
2	chr8:9226234..9227282-chr8:9688101..9689055,3	K562	blood:
3	chr8:8527857..8528805-chr8:9688247..9689065,2	K562	blood:
4	chr8:9224923..9225494-chr8:9688129..9688755,2	MCF-7	breast:
5	chr8:9617693..9618675-chr8:9688115..9689212,3	K562	blood:
6	chr8:9178042..9178608-chr8:9688275..9689205,2	MCF-7	breast:
7	chr8:9618867..9619594-chr8:9688240..9688751,2	K562	blood:
8	chr8:9606177..9606904-chr8:9688214..9688998,2	MCF-7	breast:
9	chr1:43047085..43047605-chr8:9688214..9688790,2	MCF-7	breast:
10	chr13:47630937..47631456-chr8:9688233..9688778,2	MCF-7	breast:
11	chr8:9195933..9196478-chr8:9688212..9689059,2	MCF-7	breast:
12	chr8:9617728..9618733-chr8:9688111..9689059,9	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10088284	1.00[EUR][1000 genomes]
rs17150856	1.00[EUR][1000 genomes]
rs17150869	1.00[EUR][1000 genomes]
rs28544392	1.00[EUR][1000 genomes]
rs55925951	1.00[EUR][1000 genomes]
rs56353052	1.00[EUR][1000 genomes]
rs6993192	1.00[EUR][1000 genomes]
rs6998126	1.00[EUR][1000 genomes]
rs7001347	1.00[EUR][1000 genomes]
rs73534828	1.00[EUR][1000 genomes]
rs7824016	1.00[EUR][1000 genomes]
rs7842837	1.00[EUR][1000 genomes]
rs9886522	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530864	chr8:9097498-9914548	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	esv16865	chr8:9642195-9712807	Enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv3525037	chr8:9688504-9688739	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3525038	chr8:9688504-9688739	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3336130	chr8:9688517-9688676	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	esv3450530	chr8:9688537-9688646	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv396276	chr8:9688568-9688618	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	esv3349748	chr8:9688568-9688727	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	esv3332294	chr8:9688588-9688697	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:9684200-9689000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr8:9688200-9690400	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
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