Variant report

Variant	rs10088669
Chromosome Location	chr8:112818562-112818563
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 89 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10101381	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10106758	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10107360	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10110811	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1031898	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs10955598	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11995581	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12386939	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12675386	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13271090	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13274098	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13274311	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13280154	0.83[EUR][1000 genomes]
rs13281100	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1397362	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397363	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1397369	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1397370	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1479467	0.89[EUR][1000 genomes]
rs1510564	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1858256	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1871406	0.88[EUR][1000 genomes]
rs1904354	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1904356	0.88[EUR][1000 genomes]
rs1904357	0.88[EUR][1000 genomes]
rs1904358	0.88[EUR][1000 genomes]
rs1904359	0.88[EUR][1000 genomes]
rs1904360	0.88[EUR][1000 genomes]
rs1904361	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2048358	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2048359	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2169980	0.94[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2352439	0.88[EUR][1000 genomes]
rs2352440	0.88[EUR][1000 genomes]
rs2352444	0.94[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2352451	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3106198	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs320503	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs320562	0.87[ASN][1000 genomes]
rs320563	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs320565	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4147335	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs417300	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs440036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4500105	0.86[EUR][1000 genomes]
rs451616	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4633090	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4876436	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4876440	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6469374	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6469375	0.89[EUR][1000 genomes]
rs6469376	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6469377	0.89[EUR][1000 genomes]
rs6469379	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6469387	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6987768	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6988656	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6995414	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6996495	0.94[CEU][hapmap];0.88[EUR][1000 genomes]
rs7000737	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7001512	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7007090	0.92[EUR][1000 genomes]
rs7812642	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7812994	0.89[EUR][1000 genomes]
rs7813372	0.82[EUR][1000 genomes]
rs7813398	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7813401	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7820488	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7826804	0.88[CEU][hapmap];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7828410	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7829760	0.93[EUR][1000 genomes]
rs7833965	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7838290	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7843064	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7843611	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9297453	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9297454	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9643064	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs979733	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs992953	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs992954	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995288	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs995289	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv6349	chr8:112803284-112840636	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:112817200-112818800	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr8:112817400-112818600	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr8:112817400-112819000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr8:112817800-112818600	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr8:112818200-112818600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr8:112818200-112820000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links