Variant report

Variant	rs4633090
Chromosome Location	chr8:112823394-112823395
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RP11-67H2.1.1-7	chr8:112823383-112823488	l_3669_chr8:112823382-112827015_testes

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10088669	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10101381	0.93[EUR][1000 genomes]
rs10106758	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10107360	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10110811	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1031898	0.94[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs10955598	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11995581	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12386939	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12675386	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13271090	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13274098	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13274311	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13280154	0.84[EUR][1000 genomes]
rs13281100	0.93[EUR][1000 genomes]
rs1397362	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1397363	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1397369	0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1397370	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1479467	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1510564	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1858256	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1871406	0.88[EUR][1000 genomes]
rs1904354	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1904356	0.88[EUR][1000 genomes]
rs1904357	0.88[EUR][1000 genomes]
rs1904358	0.88[EUR][1000 genomes]
rs1904359	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs1904360	0.88[EUR][1000 genomes]
rs1904361	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048358	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2048359	0.92[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2169980	0.94[CEU][hapmap];0.93[EUR][1000 genomes]
rs2352439	0.88[EUR][1000 genomes]
rs2352440	0.88[EUR][1000 genomes]
rs2352444	0.94[CEU][hapmap];0.82[JPT][hapmap];0.93[EUR][1000 genomes]
rs2352451	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3106198	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs320503	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs320562	0.88[ASN][1000 genomes]
rs320563	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs320565	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4147335	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs417300	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs440036	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4500105	0.87[EUR][1000 genomes]
rs451616	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4876436	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4876440	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6469374	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6469375	0.89[EUR][1000 genomes]
rs6469376	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6469377	0.89[EUR][1000 genomes]
rs6469379	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6469387	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6987768	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs6988656	0.93[EUR][1000 genomes]
rs6995414	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6996495	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7000737	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7001512	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7007090	0.93[EUR][1000 genomes]
rs7812642	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7812994	0.89[EUR][1000 genomes]
rs7813372	0.83[EUR][1000 genomes]
rs7813398	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7813401	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7820488	0.94[CEU][hapmap];0.89[EUR][1000 genomes]
rs7826804	0.89[CEU][hapmap];0.93[EUR][1000 genomes]
rs7828410	0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7829760	0.93[EUR][1000 genomes]
rs7833965	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7838290	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7843064	0.94[EUR][1000 genomes]
rs7843611	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9297453	0.93[EUR][1000 genomes]
rs9297454	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9643064	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs979733	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs992953	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs992954	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995288	0.94[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs995289	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027070	chr8:112490160-112844323	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015355	chr8:112558586-113154605	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv539722	chr8:112558586-113154605	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv1023006	chr8:112756497-113141033	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv539724	chr8:112756497-113141033	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv6349	chr8:112803284-112840636	Weak transcription Active TSS Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
7	nsv533857	chr8:112819659-113801258	Enhancers Bivalent Enhancer Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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