Variant report

Variant	rs10089803
Chromosome Location	chr8:19482933-19482934
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:19482760..19485283-chr8:19485806..19488434,2	K562	blood:
2	chr8:19481550..19484260-chr8:19486287..19488434,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10098690	1.00[AFR][1000 genomes]
rs10105670	0.84[AFR][1000 genomes]
rs10156383	1.00[AFR][1000 genomes]
rs13328370	0.84[AFR][1000 genomes]
rs13328417	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv610754	chr8:19419494-19525294	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv1025271	chr8:19435147-19574969	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv1015448	chr8:19474715-19520367	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19468000-19483400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:19473200-19483600	Enhancers	A549	lung
3	chr8:19477400-19483000	Weak transcription	Fetal Lung	lung
4	chr8:19477600-19483000	Weak transcription	HepG2	liver
5	chr8:19478200-19484800	Weak transcription	Left Ventricle	heart
6	chr8:19479400-19485000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:19479800-19484000	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr8:19479800-19484400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr8:19479800-19485200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr8:19480000-19484800	Enhancers	Primary T cells from cord blood	blood
11	chr8:19480000-19485800	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr8:19481200-19484400	Enhancers	Hela-S3	cervix
13	chr8:19481200-19484800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
14	chr8:19481400-19483200	Enhancers	Primary B cells from peripheral blood	blood
15	chr8:19481400-19483400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr8:19481400-19483600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:19481400-19486000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr8:19481400-19489800	Enhancers	Primary hematopoietic stem cells	blood
19	chr8:19481600-19483200	Weak transcription	Psoas Muscle	Psoas
20	chr8:19481600-19489400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:19481800-19485400	Enhancers	Osteobl	bone
22	chr8:19481800-19486400	Enhancers	Primary hematopoietic stem cells short term culture	blood
23	chr8:19481800-19487400	Weak transcription	Brain Anterior Caudate	brain
24	chr8:19482000-19520000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
25	chr8:19482200-19483200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr8:19482200-19484200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr8:19482200-19486600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
28	chr8:19482200-19486800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr8:19482400-19483200	Enhancers	Right Atrium	heart
30	chr8:19482400-19483400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr8:19482400-19483800	Enhancers	HUES48 Cell Line	embryonic stem cell
32	chr8:19482400-19484000	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr8:19482400-19484200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr8:19482400-19486000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr8:19482600-19483000	Weak transcription	Right Ventricle	heart
36	chr8:19482600-19483200	Enhancers	Primary T cells fromperipheralblood	blood
37	chr8:19482600-19483400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr8:19482600-19483400	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chr8:19482600-19483400	Enhancers	Brain Substantia Nigra	brain
40	chr8:19482600-19483400	Enhancers	Placenta	Placenta
41	chr8:19482600-19483800	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr8:19482600-19484600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr8:19482800-19483600	Enhancers	iPS-18 Cell Line	embryonic stem cell
44	chr8:19482800-19484000	Weak transcription	HUVEC	blood vessel
45	chr8:19482800-19484400	Enhancers	HUES64 Cell Line	embryonic stem cell
46	chr8:19482800-19484600	Enhancers	Monocytes-CD14+_RO01746	blood
47	chr8:19482800-19485400	Enhancers	Primary B cells from cord blood	blood
48	chr8:19482800-19485400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr8:19482800-19486800	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr8:19482800-19488000	Weak transcription	Thymus	Thymus

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