Variant report

Variant	rs10156383
Chromosome Location	chr8:19481497-19481498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10087317	1.00[YRI][hapmap]
rs10089803	1.00[AFR][1000 genomes]
rs10090079	0.82[YRI][hapmap]
rs10096485	1.00[YRI][hapmap]
rs10096490	1.00[YRI][hapmap]
rs10096638	1.00[YRI][hapmap]
rs10096712	1.00[YRI][hapmap]
rs10098690	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs10104266	1.00[YRI][hapmap]
rs10105670	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs10106180	1.00[YRI][hapmap]
rs10216575	1.00[YRI][hapmap]
rs10216916	1.00[YRI][hapmap]
rs13328370	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs13328417	0.84[AFR][1000 genomes]
rs17128520	1.00[YRI][hapmap]
rs17128532	1.00[YRI][hapmap]
rs17128535	1.00[YRI][hapmap]
rs17128545	1.00[YRI][hapmap]
rs17128662	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949636	chr8:18957705-19664732	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv948861	chr8:19199688-19609029	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949304	chr8:19199688-19625912	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	esv34007	chr8:19252602-19482098	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv890625	chr8:19368697-19799641	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
6	nsv890626	chr8:19383697-19483259	Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv890627	chr8:19389865-19561997	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv610754	chr8:19419494-19525294	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1021575	chr8:19430653-19623452	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1025271	chr8:19435147-19574969	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	nsv1015448	chr8:19474715-19520367	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19468000-19483400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:19472800-19482400	Weak transcription	Spleen	Spleen
3	chr8:19473000-19481800	Weak transcription	HUVEC	blood vessel
4	chr8:19473200-19483600	Enhancers	A549	lung
5	chr8:19474400-19482400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:19476800-19481600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr8:19477200-19482400	Weak transcription	Right Ventricle	heart
8	chr8:19477400-19482400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr8:19477400-19483000	Weak transcription	Fetal Lung	lung
10	chr8:19477600-19483000	Weak transcription	HepG2	liver
11	chr8:19478200-19484800	Weak transcription	Left Ventricle	heart
12	chr8:19478400-19482400	Weak transcription	Right Atrium	heart
13	chr8:19479400-19485000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr8:19479600-19481800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:19479600-19482200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr8:19479800-19484000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr8:19479800-19484400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
18	chr8:19479800-19485200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr8:19480000-19482200	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr8:19480000-19484800	Enhancers	Primary T cells from cord blood	blood
21	chr8:19480000-19485800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr8:19480400-19482200	Enhancers	Primary neutrophils fromperipheralblood	blood
23	chr8:19480400-19482400	Enhancers	Primary B cells from cord blood	blood
24	chr8:19480600-19481600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr8:19481200-19481800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr8:19481200-19482200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr8:19481200-19484400	Enhancers	Hela-S3	cervix
28	chr8:19481200-19484800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
29	chr8:19481400-19481600	Enhancers	iPS-18 Cell Line	embryonic stem cell
30	chr8:19481400-19481600	Enhancers	Psoas Muscle	Psoas
31	chr8:19481400-19481800	Enhancers	Primary T cells fromperipheralblood	blood
32	chr8:19481400-19482000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr8:19481400-19482400	Enhancers	Monocytes-CD14+_RO01746	blood
34	chr8:19481400-19482600	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr8:19481400-19483200	Enhancers	Primary B cells from peripheral blood	blood
36	chr8:19481400-19483400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:19481400-19483600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr8:19481400-19486000	Enhancers	Primary monocytes fromperipheralblood	blood
39	chr8:19481400-19489800	Enhancers	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links