Variant report

Variant	rs10090224
Chromosome Location	chr8:54799222-54799223
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:54797255..54799782-chr8:54801254..54803221,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10095554	1.00[AMR][1000 genomes]
rs13362868	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16919520	1.00[AMR][1000 genomes]
rs28581319	1.00[AMR][1000 genomes]
rs28828771	1.00[AMR][1000 genomes]
rs73587649	1.00[AMR][1000 genomes]
rs73587660	1.00[AMR][1000 genomes]
rs73587676	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv1023983	chr8:54790309-55145770	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv539623	chr8:54790309-55145770	Bivalent Enhancer Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54795400-54799400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:54795600-54801400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr8:54796200-54799400	Enhancers	HUVEC	blood vessel
4	chr8:54796800-54799800	Enhancers	HSMM	muscle
5	chr8:54797000-54799400	Enhancers	Osteobl	bone
6	chr8:54797800-54799600	Enhancers	K562	blood
7	chr8:54798000-54800000	Enhancers	NHDF-Ad	bronchial
8	chr8:54798000-54800200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr8:54798000-54801000	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr8:54798200-54800200	Flanking Active TSS	A549	lung
11	chr8:54798400-54799600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:54798400-54800000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr8:54798400-54814600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr8:54798600-54799400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr8:54798600-54799400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr8:54798600-54799400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr8:54798600-54800000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr8:54798800-54799400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr8:54798800-54799400	Flanking Active TSS	NHLF	lung
20	chr8:54798800-54799600	Enhancers	NH-A	brain
21	chr8:54798800-54800000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr8:54799000-54799400	Active TSS	GM12878-XiMat	blood
23	chr8:54799000-54799800	Enhancers	Hela-S3	cervix
24	chr8:54799000-54800200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr8:54799000-54800600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr8:54799000-54801000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:54799200-54799400	Flanking Active TSS	HMEC	breast
28	chr8:54799200-54799400	Flanking Active TSS	NHEK	skin
29	chr8:54799200-54799800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr8:54799200-54803800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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