Variant report

Variant	rs13362868
Chromosome Location	chr8:54771278-54771279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10090224	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10095554	1.00[AMR][1000 genomes]
rs16919520	1.00[AMR][1000 genomes]
rs28581319	1.00[AMR][1000 genomes]
rs28828771	1.00[AMR][1000 genomes]
rs73587649	1.00[AMR][1000 genomes]
rs73587660	1.00[AMR][1000 genomes]
rs73587676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021775	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539621	chr8:54631303-54827173	Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:54759200-54780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:54768000-54772600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr8:54771000-54772000	Enhancers	Dnd41	blood
4	chr8:54771200-54771400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr8:54771200-54771600	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr8:54771200-54771600	Enhancers	Primary hematopoietic stem cells	blood
7	chr8:54771200-54771600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr8:54771200-54771600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr8:54771200-54771600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:54771200-54771800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:54771200-54771800	Enhancers	GM12878-XiMat	blood
12	chr8:54771200-54772000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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