Variant report

Variant	rs10090321
Chromosome Location	chr8:122140941-122140942
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122139349..122141045-chr8:122144166..122146636,2	K562	blood:
2	chr8:122124999..122126907-chr8:122139149..122141518,2	MCF-7	breast:
3	chr8:122099369..122101426-chr8:122138809..122140970,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271219	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10086195	1.00[EUR][1000 genomes]
rs10090219	1.00[EUR][1000 genomes]
rs10095334	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12334557	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368596	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894758	1.00[EUR][1000 genomes]
rs2019502	1.00[EUR][1000 genomes]
rs28565105	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28570182	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28758639	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28778943	1.00[EUR][1000 genomes]
rs28798236	1.00[EUR][1000 genomes]
rs28819392	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28824237	1.00[EUR][1000 genomes]
rs57042634	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58358952	1.00[EUR][1000 genomes]
rs59713643	1.00[EUR][1000 genomes]
rs60453415	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60585939	1.00[EUR][1000 genomes]
rs61262459	1.00[EUR][1000 genomes]
rs6997963	1.00[EUR][1000 genomes]
rs7004573	1.00[EUR][1000 genomes]
rs9773138	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122132600-122142800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr8:122133200-122142000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr8:122139200-122141800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr8:122139400-122144000	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr8:122140000-122141800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr8:122140000-122142000	Weak transcription	Fetal Lung	lung
7	chr8:122140400-122141400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:122140600-122142400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr8:122140600-122143800	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr8:122140800-122141800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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