Variant report

Variant	rs10095334
Chromosome Location	chr8:122159921-122159922
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:122145319..122150737-chr8:122156091..122160331,6	MCF-7	breast:
2	chr8:122109979..122111922-chr8:122159196..122161835,2	MCF-7	breast:
3	chr8:122002107..122004466-chr8:122157622..122160064,2	MCF-7	breast:
4	chr5:177571121..177572812-chr8:122157856..122160060,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086195	1.00[EUR][1000 genomes]
rs10090219	1.00[EUR][1000 genomes]
rs10090321	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10110816	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10956002	0.92[AFR][1000 genomes]
rs12334557	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1368596	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16894758	1.00[EUR][1000 genomes]
rs2019502	1.00[EUR][1000 genomes]
rs28565105	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28570182	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28758639	1.00[EUR][1000 genomes]
rs28778943	1.00[EUR][1000 genomes]
rs28798236	1.00[EUR][1000 genomes]
rs28819392	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28824237	1.00[EUR][1000 genomes]
rs57042634	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58358952	1.00[EUR][1000 genomes]
rs59713643	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60453415	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60585939	1.00[EUR][1000 genomes]
rs61262459	1.00[EUR][1000 genomes]
rs6997963	1.00[EUR][1000 genomes]
rs7004573	1.00[EUR][1000 genomes]
rs9773138	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv465790	chr8:121853405-122185415	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv612114	chr8:121853405-122185415	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122157000-122160200	Enhancers	HMEC	breast
2	chr8:122157400-122160200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr8:122157400-122160400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr8:122157600-122160200	Enhancers	Fetal Muscle Leg	muscle
5	chr8:122158000-122160000	Enhancers	HSMM	muscle
6	chr8:122158200-122169800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:122158400-122165800	Weak transcription	A549	lung
8	chr8:122158600-122160400	Enhancers	Fetal Stomach	stomach
9	chr8:122158600-122161400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:122158600-122165200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr8:122158800-122163000	Weak transcription	Hela-S3	cervix
12	chr8:122159000-122160800	Enhancers	Primary hematopoietic stem cells	blood
13	chr8:122159200-122160200	Enhancers	Fetal Lung	lung
14	chr8:122159200-122163200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr8:122159400-122160000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:122159400-122160000	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr8:122159400-122160000	Enhancers	NHLF	lung
18	chr8:122159400-122160200	Enhancers	Fetal Kidney	kidney
19	chr8:122159800-122160000	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr8:122159800-122160000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:122159800-122160200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:122159800-122160200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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