Variant report

Variant	rs10090840
Chromosome Location	chr8:4819168-4819169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10081548	1.00[CHB][hapmap]
rs10090605	0.95[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104410	0.82[YRI][hapmap]
rs10110891	0.86[YRI][hapmap]
rs10448110	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs10503295	0.91[ASN][1000 genomes]
rs11136811	0.89[YRI][hapmap]
rs11136812	0.90[YRI][hapmap]
rs11136813	0.86[YRI][hapmap];0.80[AFR][1000 genomes]
rs11775382	1.00[CHB][hapmap]
rs11984699	0.86[YRI][hapmap];0.82[AFR][1000 genomes]
rs11985845	1.00[CHB][hapmap]
rs12334748	1.00[CHB][hapmap]
rs12541020	0.89[YRI][hapmap]
rs12542818	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12543601	0.91[ASN][1000 genomes]
rs12544569	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12549231	0.91[ASN][1000 genomes]
rs12549291	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13261975	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13263613	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs13282812	0.83[CEU][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17433573	1.00[CHB][hapmap]
rs4354327	0.80[CEU][hapmap];1.00[CHB][hapmap];0.86[YRI][hapmap]
rs4458898	1.00[CHB][hapmap];0.84[YRI][hapmap]
rs4636228	0.81[AFR][1000 genomes]
rs6981024	0.80[YRI][hapmap]
rs6981938	1.00[CHB][hapmap]
rs6982358	0.82[CEU][hapmap];1.00[CHB][hapmap];0.88[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6985569	0.80[YRI][hapmap]
rs6986895	0.89[YRI][hapmap]
rs7017888	0.82[YRI][hapmap]
rs7841741	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv889976	chr8:4750266-4824335	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1028542	chr8:4758159-4824005	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv889977	chr8:4802438-4820177	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv609898	chr8:4815582-4828351	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv609899	chr8:4815873-4828351	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv1025322	chr8:4818393-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1028164	chr8:4818462-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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