Variant report

Variant	rs17433573
Chromosome Location	chr8:4828036-4828037
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:4826578..4828177-chr8:4829806..4832230,2	K562	blood:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10081548	1.00[CHB][hapmap]
rs10090605	0.91[ASN][1000 genomes]
rs10090840	1.00[CHB][hapmap]
rs10503295	1.00[YRI][hapmap];0.82[ASN][1000 genomes]
rs10503297	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11775382	1.00[CHB][hapmap]
rs11985845	1.00[CHB][hapmap]
rs12334748	1.00[CHB][hapmap]
rs12542818	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs12543601	0.82[ASN][1000 genomes]
rs12544569	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs12549231	0.82[ASN][1000 genomes]
rs12549291	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs13253935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs13261975	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs13263613	1.00[CHB][hapmap];0.82[ASN][1000 genomes]
rs13265122	0.83[AMR][1000 genomes]
rs13269289	0.84[AFR][1000 genomes]
rs13274516	0.83[AMR][1000 genomes]
rs17349258	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4242497	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4266671	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4354327	1.00[CHB][hapmap]
rs4458898	1.00[CHB][hapmap]
rs4875422	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs4875424	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67446253	0.89[AFR][1000 genomes]
rs6981938	1.00[CHB][hapmap]
rs6982358	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs73179222	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73179227	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7463166	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7841741	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv609876	chr8:4494811-5092970	Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1029480	chr8:4497596-5081032	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv498130	chr8:4532988-5176376	Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1031026	chr8:4771072-5054326	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv609898	chr8:4815582-4828351	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv609899	chr8:4815873-4828351	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv1025322	chr8:4818393-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv1028164	chr8:4818462-4829588	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv1031402	chr8:4827087-4842934	Strong transcription Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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