Variant report

Variant	rs10091011
Chromosome Location	chr8:107553580-107553581
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10087813	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10094235	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10112029	0.88[JPT][hapmap]
rs1670385	1.00[ASN][1000 genomes]
rs1670398	0.84[ASN][1000 genomes]
rs1789981	0.81[ASN][1000 genomes]
rs1901778	0.84[ASN][1000 genomes]
rs1901779	0.84[ASN][1000 genomes]
rs1901783	0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2034655	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7010840	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1802539	chr8:107540021-107567329	Enhancers Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107526800-107568400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107530400-107572800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107552000-107553800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107552200-107553600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:107552200-107553800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:107552400-107553800	Weak transcription	Osteobl	bone
8	chr8:107552600-107553800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr8:107552600-107553800	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr8:107552600-107561800	Weak transcription	NHLF	lung
11	chr8:107552600-107562200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr8:107552600-107562200	Weak transcription	NHDF-Ad	bronchial
13	chr8:107552600-107570600	Weak transcription	NH-A	brain
14	chr8:107553000-107553600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr8:107553200-107554000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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