Variant report

(count:25 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr8:107589766-107590407	HCT-116	colon:	n/a	n/a
2	CTCF	chr8:107589798-107590277	MCF-7	breast:	n/a	n/a
3	SMC3	chr8:107589853-107590273	HepG2	liver:	n/a	n/a
4	GABPA	chr8:107589787-107590339	MCF-7	breast:	n/a	n/a
5	GABPA	chr8:107589635-107590476	MCF-7	breast:	n/a	n/a
6	RAD21	chr8:107589870-107590394	HepG2	liver:	n/a	n/a
7	CTCF	chr8:107589719-107590352	SK-N-SH	brain:	n/a	n/a
8	GABPA	chr8:107589911-107590314	HL-60	blood:	n/a	n/a
9	RAD21	chr8:107589798-107590274	HepG2	liver:	n/a	n/a
10	JUND	chr8:107589889-107590326	H1-hESC	embryonic stem cell:	n/a	n/a
11	CTCF	chr8:107589720-107590288	K562	blood:	n/a	n/a
12	ELF1	chr8:107589808-107590352	MCF-7	breast:	n/a	n/a
13	RAD21	chr8:107589780-107590292	HCT-116	colon:	n/a	n/a
14	TEAD4	chr8:107589903-107590273	H1-hESC	embryonic stem cell:	n/a	n/a
15	TEAD4	chr8:107589881-107590276	ECC-1	luminal epithelium:	n/a	n/a
16	RAD21	chr8:107589775-107590266	HCT-116	colon:	n/a	n/a
17	RAD21	chr8:107589849-107590269	ECC-1	luminal epithelium:	n/a	n/a
18	RAD21	chr8:107589729-107590321	MCF-7	breast:	n/a	n/a
19	CBX3	chr8:107589807-107590350	HCT-116	colon:	n/a	n/a
20	CTCF	chr8:107589808-107590327	HCT-116	colon:	n/a	n/a
21	CTCF	chr8:107590180-107590330	HAc	cerebellar:	n/a	n/a
22	CTCF	chr8:107589797-107590283	MCF-7	breast:	n/a	n/a
23	CTCF	chr8:107589850-107590363	A549	lung:	n/a	n/a
24	RAD21	chr8:107589757-107590311	H1-hESC	embryonic stem cell:	n/a	n/a
25	ELF1	chr8:107589798-107590281	MCF-7	breast:	n/a	n/a

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107589621..107590429-chr8:107603675..107604668,5	MCF-7	breast:

No data

Variant related genes	Relation type
OXR1	TF binding region

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10109929	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1901778	0.83[AFR][1000 genomes]
rs1901779	0.83[AFR][1000 genomes]
rs3101541	0.85[JPT][hapmap]
rs3110431	0.83[JPT][hapmap]
rs3134120	0.90[JPT][hapmap]
rs7815303	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7818918	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7837012	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv3417427	chr8:107572825-107590283	Weak transcription Genic enhancers Enhancers Active TSS Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107587000-107592000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:107589800-107590400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107590000-107590400	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
5	chr8:107590000-107590400	Enhancers	HSMMtube	muscle
6	chr8:107590000-107590400	Active TSS	K562	blood
7	chr8:107590000-107591800	Enhancers	Stomach Mucosa	stomach
8	chr8:107590000-107593600	Enhancers	Fetal Intestine Small	intestine
9	chr8:107590000-107593800	Enhancers	Fetal Intestine Large	intestine
10	chr8:107590200-107591200	Weak transcription	Gastric	stomach
11	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea

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