Variant report

Variant	rs3134120
Chromosome Location	chr8:107604321-107604322
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:
2	chr8:106920159..106921437-chr8:107603839..107604727,4	MCF-7	breast:
3	chr8:106917185..106917788-chr8:107603831..107604640,2	MCF-7	breast:
4	chr8:107151368..107151962-chr8:107603809..107604341,2	MCF-7	breast:
5	chr8:107532601..107533546-chr8:107603982..107604668,2	MCF-7	breast:
6	chr8:106793672..106794194-chr8:107604034..107604594,2	MCF-7	breast:
7	chr8:107603766..107606561-chr8:107668197..107669821,2	MCF-7	breast:
8	chr8:106918479..106919292-chr8:107603720..107604631,2	MCF-7	breast:
9	chr8:106945057..106945974-chr8:107604226..107604770,2	MCF-7	breast:
10	chr8:107589621..107590429-chr8:107603675..107604668,5	MCF-7	breast:
11	chr8:107016322..107017410-chr8:107603753..107604682,5	MCF-7	breast:
12	chr8:106917815..106919520-chr8:107603747..107605061,5	MCF-7	breast:
13	chr8:106951745..106953008-chr8:107603708..107604641,6	MCF-7	breast:
14	chr8:106952181..106953106-chr8:107603771..107604489,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10093154	0.92[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10112029	0.90[JPT][hapmap]
rs1350984	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2346131	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502602	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101525	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101527	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3101529	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101530	0.80[JPT][hapmap]
rs3101536	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101537	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101540	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101541	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3110428	0.81[ASN][1000 genomes]
rs3110431	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110437	0.84[CEU][hapmap];0.84[CHB][hapmap];0.85[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110774	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110776	0.84[ASN][1000 genomes]
rs3110777	0.86[ASN][1000 genomes]
rs3132802	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3132804	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134118	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134122	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134123	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134124	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134133	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134134	0.84[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134135	0.84[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134136	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134137	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56063590	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838459	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107602200-107606000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr8:107603800-107605000	Enhancers	Primary B cells from peripheral blood	blood
9	chr8:107603800-107605000	Enhancers	GM12878-XiMat	blood
10	chr8:107604000-107604400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
11	chr8:107604000-107604400	Enhancers	Fetal Kidney	kidney
12	chr8:107604000-107604400	Active TSS	Rectal Mucosa Donor 29	rectum
13	chr8:107604000-107604400	Active TSS	Monocytes-CD14+_RO01746	blood
14	chr8:107604000-107605400	Enhancers	Primary hematopoietic stem cells	blood
15	chr8:107604200-107604400	Enhancers	Rectal Mucosa Donor 31	rectum
16	chr8:107604200-107605000	Weak transcription	HepG2	liver
17	chr8:107604200-107605200	Enhancers	Primary B cells from cord blood	blood
18	chr8:107604200-107606200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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