Variant report

Variant	rs3101525
Chromosome Location	chr8:107623453-107623454
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107621102..107628249-chr8:107632909..107636528,6	MCF-7	breast:
2	chr8:107616759..107623874-chr8:107668754..107672668,12	MCF-7	breast:
3	chr8:107618492..107620139-chr8:107622531..107624035,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10093154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1350984	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2045787	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2126582	0.84[GIH][hapmap]
rs2346131	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28502602	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101523	0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3101524	0.81[ASN][1000 genomes]
rs3101527	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3101529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101530	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3101536	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101537	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101540	0.85[EUR][1000 genomes]
rs3101541	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs3110425	0.85[EUR][1000 genomes]
rs3110431	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3110437	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3110774	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3132802	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3132804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134118	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134120	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134122	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134123	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134124	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3134133	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3134134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134136	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134137	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134138	0.92[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134139	0.92[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134140	0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs56063590	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7838459	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107616800-107624200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr8:107617200-107623600	Weak transcription	Rectal Smooth Muscle	rectum
4	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr8:107618000-107623800	Enhancers	Stomach Mucosa	stomach
6	chr8:107619800-107625000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
8	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
9	chr8:107621200-107623600	Enhancers	NHEK	skin
10	chr8:107621200-107623800	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr8:107621200-107624400	Weak transcription	Stomach Smooth Muscle	stomach
12	chr8:107621200-107627600	Weak transcription	Osteobl	bone
13	chr8:107621200-107629800	Weak transcription	Duodenum Mucosa	Duodenum
14	chr8:107621400-107633400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:107621600-107629600	Weak transcription	HepG2	liver
16	chr8:107622200-107623600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr8:107622200-107624800	Weak transcription	GM12878-XiMat	blood
18	chr8:107622400-107624000	Enhancers	Brain Angular Gyrus	brain
19	chr8:107622600-107623800	Enhancers	HMEC	breast
20	chr8:107622800-107623600	Enhancers	Esophagus	oesophagus
21	chr8:107622800-107624000	Enhancers	Gastric	stomach
22	chr8:107623000-107623800	Enhancers	Fetal Heart	heart
23	chr8:107623200-107624400	Enhancers	Liver	Liver
24	chr8:107623400-107623600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr8:107623400-107623600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr8:107623400-107623800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr8:107623400-107624000	Enhancers	Right Atrium	heart

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