Variant report

Variant	rs3101540
Chromosome Location	chr8:107593769-107593770
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10093154	0.84[CEU][hapmap];0.80[JPT][hapmap];0.85[EUR][1000 genomes]
rs10112029	0.81[JPT][hapmap]
rs2346131	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28502602	0.85[EUR][1000 genomes]
rs3101525	0.85[EUR][1000 genomes]
rs3101527	0.84[EUR][1000 genomes]
rs3101529	0.81[JPT][hapmap]
rs3101536	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101537	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101541	0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs3110428	0.96[ASN][1000 genomes]
rs3110431	0.84[CEU][hapmap];0.81[CHB][hapmap];0.85[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110774	0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110776	0.98[ASN][1000 genomes]
rs3110777	1.00[ASN][1000 genomes]
rs3132804	0.84[JPT][hapmap]
rs3134118	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134120	0.92[CEU][hapmap];0.81[CHB][hapmap];0.90[JPT][hapmap];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134122	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134123	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134124	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134133	0.85[EUR][1000 genomes]
rs3134134	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs3134135	0.81[JPT][hapmap];0.85[EUR][1000 genomes]
rs3134136	0.85[EUR][1000 genomes]
rs3134137	0.85[EUR][1000 genomes]
rs56063590	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7838459	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107590000-107593800	Enhancers	Fetal Intestine Large	intestine
3	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
4	chr8:107591800-107594000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr8:107593200-107594800	Active TSS	Fetal Kidney	kidney
7	chr8:107593600-107594600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr8:107593600-107594800	Weak transcription	Fetal Intestine Small	intestine

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