Variant report

Variant	rs3134123
Chromosome Location	chr8:107602279-107602280
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10093154	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1350984	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2346131	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502602	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101525	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101527	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3101529	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101536	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101537	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101540	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101541	1.00[ASN][1000 genomes]
rs3110428	0.81[ASN][1000 genomes]
rs3110431	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110437	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110776	0.84[ASN][1000 genomes]
rs3110777	0.86[ASN][1000 genomes]
rs3132802	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3132804	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134118	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134120	0.86[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134124	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134133	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134134	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134135	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134136	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134137	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs56063590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838459	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv981973	chr8:107599981-107603945	Flanking Active TSS Enhancers Weak transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr8:107601600-107606800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
5	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:107601800-107606600	Weak transcription	Fetal Intestine Small	intestine
7	chr8:107602000-107603800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr8:107602000-107604200	Weak transcription	Rectal Mucosa Donor 31	rectum
9	chr8:107602200-107606000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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