Variant report

No.	Distal block	Cell Line	Cell type
1	chr8:107591263..107592777-chr8:107615889..107617412,2	MCF-7	breast:
2	chr8:107590821..107592814-chr8:107669178..107671520,2	MCF-7	breast:
3	chr8:107590391..107592343-chr8:107594481..107597420,2	K562	blood:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10093154	0.84[CHB][hapmap];0.85[JPT][hapmap]
rs10112029	0.85[JPT][hapmap]
rs2346131	1.00[ASN][1000 genomes]
rs3101525	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs3101529	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3101536	1.00[ASN][1000 genomes]
rs3101537	1.00[ASN][1000 genomes]
rs3101540	0.86[ASN][1000 genomes]
rs3110428	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3110431	0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs3110437	0.80[JPT][hapmap]
rs3110774	1.00[ASN][1000 genomes]
rs3110776	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3110777	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3132804	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs3134118	0.81[ASN][1000 genomes]
rs3134120	0.95[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3134122	1.00[ASN][1000 genomes]
rs3134123	1.00[ASN][1000 genomes]
rs3134124	0.86[ASN][1000 genomes]
rs3134133	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs3134134	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3134135	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3134136	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs56063590	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107587000-107592000	Weak transcription	Brain Germinal Matrix	brain
3	chr8:107590000-107591800	Enhancers	Stomach Mucosa	stomach
4	chr8:107590000-107593600	Enhancers	Fetal Intestine Small	intestine
5	chr8:107590000-107593800	Enhancers	Fetal Intestine Large	intestine
6	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
7	chr8:107590400-107591600	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr8:107590800-107592400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:107591000-107592400	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr8:107591000-107593000	Enhancers	Fetal Kidney	kidney
11	chr8:107591200-107591800	Enhancers	Fetal Lung	lung
12	chr8:107591200-107592000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr8:107591200-107592200	Enhancers	Gastric	stomach
14	chr8:107591400-107591800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr8:107591400-107592000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr8:107591400-107592400	Enhancers	Breast Myoepithelial Primary Cells	Breast

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