Variant report

Variant	rs3110431
Chromosome Location	chr8:107606826-107606827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107603658..107609458-chr8:107669183..107672502,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10093154	0.87[CEU][hapmap];0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10112029	0.83[JPT][hapmap]
rs1350984	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2126582	0.84[GIH][hapmap]
rs2346131	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28502602	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3101525	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3101527	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101529	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3101530	0.84[JPT][hapmap]
rs3101536	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101537	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101540	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3101541	0.94[CHB][hapmap];0.90[JPT][hapmap];0.98[ASN][1000 genomes]
rs3110437	0.84[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3110774	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110776	0.82[ASN][1000 genomes]
rs3110777	0.83[ASN][1000 genomes]
rs3132802	0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3132804	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3134118	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3134120	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134122	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134123	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134124	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134133	0.89[CHB][hapmap];0.85[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3134134	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3134135	0.89[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3134136	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3134137	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3134138	0.80[TSI][hapmap]
rs3134139	0.80[TSI][hapmap]
rs56063590	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7838459	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3110431	OXR1	cis	parietal	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107610200	Weak transcription	Stomach Mucosa	stomach
3	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:107605000-107607800	Weak transcription	GM12878-XiMat	blood
5	chr8:107605000-107609200	Weak transcription	Primary B cells from peripheral blood	blood
6	chr8:107605200-107609200	Weak transcription	Primary B cells from cord blood	blood
7	chr8:107605200-107609600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr8:107605400-107609600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr8:107605400-107609800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr8:107605600-107609200	Weak transcription	Fetal Thymus	thymus
11	chr8:107606000-107607400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr8:107606000-107607600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr8:107606000-107607600	Enhancers	Fetal Heart	heart
14	chr8:107606200-107607000	Enhancers	Colon Smooth Muscle	Colon
15	chr8:107606200-107607600	Enhancers	Rectal Smooth Muscle	rectum
16	chr8:107606200-107609400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr8:107606400-107607000	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr8:107606600-107607200	Enhancers	Brain Cingulate Gyrus	brain
19	chr8:107606600-107607200	Enhancers	Fetal Stomach	stomach
20	chr8:107606600-107607200	Enhancers	NH-A	brain
21	chr8:107606600-107607400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:107606600-107607400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr8:107606600-107607400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
24	chr8:107606600-107607600	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr8:107606800-107607200	Enhancers	Brain Anterior Caudate	brain
26	chr8:107606800-107607200	Flanking Active TSS	Stomach Smooth Muscle	stomach
27	chr8:107606800-107607400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:107606800-107607400	Enhancers	Brain Angular Gyrus	brain
29	chr8:107606800-107607400	Enhancers	Osteobl	bone
30	chr8:107606800-107607600	Enhancers	Breast Myoepithelial Primary Cells	Breast

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