Variant report

Variant	rs3101537
Chromosome Location	chr8:107597357-107597358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107590391..107592343-chr8:107594481..107597420,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10093154	0.91[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10112029	0.89[JPT][hapmap]
rs1350984	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2126582	0.82[GIH][hapmap]
rs2346131	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502602	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101525	0.87[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101527	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3101529	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3101540	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3101541	0.94[CHB][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs3110428	0.81[ASN][1000 genomes]
rs3110431	0.92[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.98[TSI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3110437	0.87[CEU][hapmap];0.84[CHB][hapmap];0.84[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3110774	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3110776	0.84[ASN][1000 genomes]
rs3110777	0.86[ASN][1000 genomes]
rs3132802	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3132804	0.85[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134118	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134120	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134122	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134124	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3134133	0.87[CEU][hapmap];0.89[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.91[MEX][hapmap];0.91[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134134	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134135	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134136	0.87[CEU][hapmap];0.89[CHB][hapmap];0.87[CHD][hapmap];0.97[GIH][hapmap];0.89[JPT][hapmap];0.91[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134137	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134138	0.82[CHD][hapmap]
rs3134139	0.81[CHD][hapmap]
rs56063590	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7838459	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3101537	OXR1	cis	parietal	SCAN

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107590200-107601400	Weak transcription	Pancreas	Pancrea
3	chr8:107592400-107606600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr8:107594200-107601200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:107594800-107600600	Weak transcription	Fetal Intestine Large	intestine

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