Variant report

Variant	rs28502602
Chromosome Location	chr8:107616229-107616230
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107591263..107592777-chr8:107615889..107617412,2	MCF-7	breast:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10093154	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1350984	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2045787	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2346131	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101523	0.82[ASN][1000 genomes]
rs3101525	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101527	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101529	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3101536	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101537	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101540	0.85[EUR][1000 genomes]
rs3110425	0.85[EUR][1000 genomes]
rs3110431	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3110437	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3110774	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3132802	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs3132804	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3134118	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134120	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134122	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134123	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134124	0.87[EUR][1000 genomes]
rs3134133	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3134134	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134135	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134136	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134137	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134138	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3134139	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3134140	0.82[ASN][1000 genomes]
rs56063590	0.87[EUR][1000 genomes]
rs7838459	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107512400-107620200	Weak transcription	Aorta	Aorta
2	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr8:107607400-107616400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:107607400-107617000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr8:107607600-107616800	Weak transcription	Rectal Smooth Muscle	rectum
6	chr8:107607600-107618200	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr8:107610800-107616400	Weak transcription	HUVEC	blood vessel
8	chr8:107610800-107619200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr8:107611000-107617000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:107611600-107616600	Weak transcription	Stomach Mucosa	stomach
11	chr8:107611600-107619400	Weak transcription	Fetal Thymus	thymus
12	chr8:107612800-107618800	Weak transcription	Gastric	stomach
13	chr8:107613200-107616600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr8:107614400-107618400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr8:107614800-107616800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr8:107615400-107616800	Weak transcription	Colon Smooth Muscle	Colon
17	chr8:107616000-107620800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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