Variant report

Variant	rs3134140
Chromosome Location	chr8:107628975-107628976
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107628207..107632288-chr8:107667853..107671892,6	MCF-7	breast:
2	chr8:107627292..107630232-chr8:107665410..107668409,2	MCF-7	breast:
3	chr8:107628700..107633249-chr8:107668680..107671616,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10093154	0.80[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1350984	0.83[ASN][1000 genomes]
rs2045787	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28502602	0.82[ASN][1000 genomes]
rs3101523	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3101524	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101525	0.81[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3101527	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3101529	0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs3110425	0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3110437	0.88[YRI][hapmap];0.81[ASN][1000 genomes]
rs3132802	0.82[ASN][1000 genomes]
rs3132804	0.81[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs3134118	0.81[ASN][1000 genomes]
rs3134133	0.81[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs3134134	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs3134135	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3134136	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs3134137	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs3134138	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134139	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7838459	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620000-107629800	Weak transcription	Primary T cells from cord blood	blood
4	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
5	chr8:107621200-107629800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr8:107621400-107633400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr8:107621600-107629600	Weak transcription	HepG2	liver
8	chr8:107623800-107630000	Weak transcription	HMEC	breast
9	chr8:107624000-107630200	Weak transcription	Gastric	stomach
10	chr8:107625600-107629800	Weak transcription	GM12878-XiMat	blood
11	chr8:107627800-107629200	Weak transcription	Stomach Mucosa	stomach
12	chr8:107628200-107629400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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