Variant report

Variant	rs3132804
Chromosome Location	chr8:107663209-107663210
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107652584..107654414-chr8:107662891..107664399,2	MCF-7	breast:
2	chr8:107661322..107665334-chr8:107667515..107672070,5	MCF-7	breast:
3	chr8:107661627..107663921-chr8:107666779..107668430,2	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10093154	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1350984	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2045787	0.80[ASN][1000 genomes]
rs2126582	0.84[JPT][hapmap]
rs2346131	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs28502602	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3101523	0.81[JPT][hapmap];0.87[YRI][hapmap];0.81[ASN][1000 genomes]
rs3101525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3101527	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3101529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101530	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101536	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3101537	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3101541	0.88[CHB][hapmap];0.84[JPT][hapmap]
rs3110425	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3110431	0.88[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3110437	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3110438	0.84[JPT][hapmap]
rs3110774	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3132802	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134118	0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134120	0.81[CEU][hapmap];0.88[CHB][hapmap];0.89[JPT][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134122	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134123	0.89[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3134124	0.80[AMR][1000 genomes]
rs3134133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134137	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134138	0.80[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3134139	0.80[JPT][hapmap];0.86[YRI][hapmap];0.80[ASN][1000 genomes]
rs3134140	0.81[JPT][hapmap];0.87[YRI][hapmap];0.80[ASN][1000 genomes]
rs56063590	0.80[AMR][1000 genomes]
rs7838459	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107658200-107668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:107658600-107668600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107660600-107666400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:107661400-107669400	Weak transcription	Esophagus	oesophagus
6	chr8:107661600-107668600	Weak transcription	Stomach Mucosa	stomach
7	chr8:107662800-107668800	Weak transcription	Placenta Amnion	Placenta Amnion

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