Variant report

Variant	rs3101530
Chromosome Location	chr8:107665059-107665060
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10093154	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs1350984	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2126582	0.87[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3101525	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs3101527	0.88[ASN][1000 genomes]
rs3101529	0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3110431	0.84[JPT][hapmap]
rs3110437	0.83[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3110438	0.87[CEU][hapmap];0.89[JPT][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3132802	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3132804	0.82[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3132805	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs3134120	0.80[JPT][hapmap]
rs3134133	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs3134134	0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs3134135	0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134136	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3134137	0.86[ASN][1000 genomes]
rs7838459	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107658200-107668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:107658600-107668600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107660600-107666400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:107661400-107669400	Weak transcription	Esophagus	oesophagus
6	chr8:107661600-107668600	Weak transcription	Stomach Mucosa	stomach
7	chr8:107662800-107668800	Weak transcription	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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