Variant report

Variant	rs3101529
Chromosome Location	chr8:107659806-107659807
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:107652178..107654915-chr8:107656607..107660694,3	MCF-7	breast:
2	chr8:107651808..107653690-chr8:107657768..107660605,2	K562	blood:
3	chr8:107658421..107660854-chr8:107669209..107671356,2	MCF-7	breast:
4	chr8:107659105..107661326-chr8:107669258..107671281,2	K562	blood:
5	chr8:107659254..107661687-chr8:107668405..107671504,3	K562	blood:

Variant related genes	Relation type
ENSG00000164830	Chromatin interaction
ENSG00000253582	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10093154	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1350984	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045787	0.83[ASN][1000 genomes]
rs2346131	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs28502602	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3101523	0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.84[ASN][1000 genomes]
rs3101524	0.83[ASN][1000 genomes]
rs3101525	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3101527	0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101530	0.83[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3101536	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101537	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3101541	0.85[CHB][hapmap];0.85[JPT][hapmap]
rs3110425	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3110431	0.89[CHB][hapmap];0.95[JPT][hapmap];0.83[YRI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs3110437	0.92[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.97[YRI][hapmap];0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3110438	0.80[JPT][hapmap]
rs3110774	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3132802	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3132804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134118	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134120	0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134122	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134123	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3134124	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3134133	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3134134	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134135	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134136	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134137	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134138	0.81[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs3134139	0.81[JPT][hapmap];0.90[YRI][hapmap];0.83[ASN][1000 genomes]
rs3134140	0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.83[ASN][1000 genomes]
rs56063590	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7838459	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107648600-107662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:107657800-107661200	Weak transcription	Stomach Mucosa	stomach
4	chr8:107658000-107661200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr8:107658200-107668800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:107658600-107668600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr8:107659200-107660600	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr8:107659400-107660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr8:107659400-107660600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:107659600-107660000	Enhancers	Primary B cells from cord blood	blood
11	chr8:107659800-107660200	Enhancers	Primary hematopoietic stem cells	blood

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