Variant report

Variant	rs3110425
Chromosome Location	chr8:107649626-107649627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107639670..107643693-chr8:107648577..107651527,3	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10093154	0.92[CEU][hapmap];0.80[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1350984	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2045787	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28502602	0.85[EUR][1000 genomes]
rs3101523	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3101524	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3101525	0.92[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes]
rs3101527	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3101529	0.80[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3110431	0.83[YRI][hapmap]
rs3110437	0.88[CEU][hapmap];0.97[YRI][hapmap];0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3132802	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3132804	0.86[CEU][hapmap];0.81[JPT][hapmap];0.96[YRI][hapmap];0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs3134118	0.84[EUR][1000 genomes]
rs3134120	0.80[CEU][hapmap]
rs3134133	0.92[CEU][hapmap];0.81[JPT][hapmap];0.90[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134134	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3134135	0.88[CEU][hapmap];0.81[CHB][hapmap];0.82[JPT][hapmap];0.91[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134136	0.92[CEU][hapmap];0.81[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134137	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3134138	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134139	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3134140	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7838459	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv6342	chr8:107644092-107688898	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
3	chr8:107630600-107657200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:107636800-107657400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr8:107643000-107656600	Weak transcription	Stomach Mucosa	stomach
6	chr8:107643400-107658800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr8:107648600-107662400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:107649000-107650000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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