Variant report

Variant	rs3134136
Chromosome Location	chr8:107630536-107630537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:107628207..107632288-chr8:107667853..107671892,6	MCF-7	breast:
2	chr8:107628700..107633249-chr8:107668680..107671616,7	MCF-7	breast:

Variant related genes	Relation type
ENSG00000253582	Chromatin interaction
ENSG00000164830	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10093154	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1350984	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2045787	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2126582	0.84[GIH][hapmap]
rs2346131	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28502602	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3101523	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs3101524	0.84[ASN][1000 genomes]
rs3101525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3101527	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3101529	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3101530	0.82[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs3101536	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101537	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3101540	0.85[EUR][1000 genomes]
rs3101541	0.84[CHB][hapmap];0.84[JPT][hapmap]
rs3110425	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs3110431	0.89[CHB][hapmap];0.82[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.93[TSI][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs3110437	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3110774	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3132802	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3132804	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3134118	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3134120	0.87[CEU][hapmap];0.89[CHB][hapmap];0.89[JPT][hapmap];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134122	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134123	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3134124	0.87[EUR][1000 genomes]
rs3134133	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3134134	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3134135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134137	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3134138	0.89[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134139	0.89[CHD][hapmap];0.81[JPT][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3134140	0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs56063590	0.87[EUR][1000 genomes]
rs7838459	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533134	chr8:107307812-107670002	Weak transcription Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv831419	chr8:107624709-107827801	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs3134136	OXR1	cis	parietal	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:107601600-107669600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:107617200-107641000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:107620400-107653400	Weak transcription	Aorta	Aorta
4	chr8:107621400-107633400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr8:107629800-107630600	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr8:107629800-107630800	Enhancers	Fetal Kidney	kidney
7	chr8:107630000-107630600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr8:107630000-107630600	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr8:107630000-107630600	Enhancers	Fetal Lung	lung
10	chr8:107630000-107630800	Active TSS	Liver	Liver
11	chr8:107630000-107630800	Active TSS	Duodenum Mucosa	Duodenum
12	chr8:107630200-107630600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr8:107630200-107630600	Active TSS	Colonic Mucosa	Colon
14	chr8:107630200-107630600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
15	chr8:107630200-107630600	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr8:107630200-107630600	Enhancers	Fetal Thymus	thymus
17	chr8:107630200-107630600	Active TSS	Gastric	stomach
18	chr8:107630200-107630600	Active TSS	Rectal Smooth Muscle	rectum
19	chr8:107630200-107630600	Enhancers	Right Ventricle	heart
20	chr8:107630200-107630600	Flanking Active TSS	GM12878-XiMat	blood
21	chr8:107630200-107630800	Active TSS	Duodenum Smooth Muscle	Duodenum
22	chr8:107630200-107630800	Active TSS	HMEC	breast
23	chr8:107630200-107631000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr8:107630200-107631200	Active TSS	Fetal Stomach	stomach
25	chr8:107630200-107631400	Active TSS	Breast Myoepithelial Primary Cells	Breast
26	chr8:107630200-107631400	Active TSS	HepG2	liver
27	chr8:107630400-107630600	Enhancers	Small Intestine	intestine
28	chr8:107630400-107630800	Flanking Active TSS	Fetal Intestine Small	intestine
29	chr8:107630400-107631400	Active TSS	Stomach Mucosa	stomach

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