Variant report

Variant	rs10091357
Chromosome Location	chr8:92063552-92063553
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:92062755..92064873-chr8:92080530..92082546,2	MCF-7	breast:
2	chr8:92058352..92060155-chr8:92063474..92065683,2	K562	blood:
3	chr8:92063160..92065847-chr8:92076353..92077933,2	K562	blood:
4	chr8:92050004..92056454-chr8:92058194..92067422,9	K562	blood:
5	chr8:92063513..92065129-chr8:92073946..92075956,2	MCF-7	breast:
6	chr8:92063035..92066219-chr8:92067265..92071274,6	K562	blood:

Variant related genes	Relation type
ENSG00000253738	Chromatin interaction
ENSG00000155100	Chromatin interaction
ENSG00000155099	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10086690	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10087080	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10087372	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10090882	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10091616	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs10097509	0.85[ASN][1000 genomes]
rs10113460	1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10490979	1.00[CHD][hapmap]
rs1060583	1.00[CHD][hapmap]
rs12386850	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905862	1.00[CHD][hapmap]
rs28398373	0.85[ASN][1000 genomes]
rs28514810	0.85[ASN][1000 genomes]
rs4260862	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4467904	0.83[TSI][hapmap];0.80[EUR][1000 genomes]
rs4609161	0.86[CHB][hapmap]
rs57609704	0.81[ASN][1000 genomes]
rs61003561	0.80[EUR][1000 genomes]
rs6651175	1.00[CHD][hapmap]
rs6999873	0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs7017072	1.00[CHD][hapmap]
rs73301705	0.80[EUR][1000 genomes]
rs73301707	0.80[EUR][1000 genomes]
rs7820781	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7843850	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2758623	chr8:91974499-92273724	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	esv2759629	chr8:91974499-92273724	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
5	nsv831390	chr8:92037011-92198605	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10091357	OTUD6B	cis	cerebellum	SCAN

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:92053800-92065800	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr8:92053800-92080400	Weak transcription	Fetal Brain Female	brain
3	chr8:92057000-92071200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr8:92058200-92064800	Weak transcription	K562	blood
5	chr8:92061000-92079200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr8:92061400-92074600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr8:92061400-92075000	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr8:92061400-92076600	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr8:92062800-92063600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr8:92062800-92064200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr8:92062800-92065000	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr8:92063200-92079000	Weak transcription	Primary B cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links