Variant report

Variant	rs7017072
Chromosome Location	chr8:91895888-91895889
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91701605..91703833-chr8:91894006..91896640,2	MCF-7	breast:
2	chr8:91783111..91784615-chr8:91894731..91896349,2	MCF-7	breast:
3	chr8:91656933..91659959-chr8:91892955..91896936,5	MCF-7	breast:
4	chr8:91791129..91792851-chr8:91894745..91897195,2	MCF-7	breast:
5	chr8:91888393..91905767-chr8:91919159..91931807,48	MCF-7	breast:
6	chr8:91870161..91874296-chr8:91895687..91899910,5	MCF-7	breast:
7	chr8:91895496..91897971-chr8:91924630..91926928,4	MCF-7	breast:
8	chr8:91655658..91658801-chr8:91893915..91897797,5	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000180694	Chromatin interaction
ENSG00000254251	Chromatin interaction
ENSG00000246792	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10087080	1.00[CHD][hapmap]
rs10091357	1.00[CHD][hapmap]
rs10092379	0.82[CHB][hapmap]
rs10113460	0.82[CHB][hapmap]
rs10490979	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs10504897	0.82[CHB][hapmap]
rs10504900	0.82[CHB][hapmap]
rs10504902	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs1060583	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];0.86[YRI][hapmap]
rs11994903	0.82[CHB][hapmap]
rs11997330	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs12114104	1.00[CHD][hapmap]
rs12114679	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs16905331	0.82[CHB][hapmap]
rs16905427	0.82[CHB][hapmap];1.00[CHD][hapmap]
rs16905437	0.82[CHB][hapmap]
rs16905862	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[YRI][hapmap];0.82[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs16906071	0.88[YRI][hapmap];0.84[ASN][1000 genomes]
rs16907242	0.85[CHB][hapmap]
rs2202392	0.82[CHB][hapmap]
rs4260862	1.00[CHD][hapmap]
rs4389891	0.82[CHB][hapmap]
rs6471253	0.82[CHB][hapmap]
rs6651175	1.00[ASW][hapmap];0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[MEX][hapmap]
rs6999220	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7006863	0.85[CHB][hapmap]
rs7013400	0.82[CHB][hapmap]
rs73295963	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73298014	0.84[ASN][1000 genomes]
rs7815900	0.82[CHB][hapmap]
rs7818979	0.85[CHB][hapmap]
rs7838907	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91876800-91901000	Weak transcription	Aorta	Aorta
2	chr8:91890400-91907600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr8:91890600-91902800	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr8:91893800-91897800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr8:91894800-91896600	Enhancers	NHDF-Ad	bronchial
6	chr8:91895000-91896400	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:91895000-91896400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr8:91895200-91896200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:91895400-91896000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:91895400-91896000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr8:91895600-91896000	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr8:91895600-91896000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:91895600-91896000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr8:91895600-91896000	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr8:91895600-91896000	Enhancers	Brain Angular Gyrus	brain
16	chr8:91895600-91896000	Enhancers	Brain Anterior Caudate	brain
17	chr8:91895600-91896000	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr8:91895600-91896000	Enhancers	Fetal Stomach	stomach
19	chr8:91895600-91896000	Enhancers	Skeletal Muscle Male	skeletal muscle
20	chr8:91895600-91896200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:91895600-91896200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr8:91895600-91896200	Enhancers	Brain Substantia Nigra	brain
23	chr8:91895600-91896200	Enhancers	Fetal Heart	heart
24	chr8:91895600-91896200	Enhancers	NHLF	lung
25	chr8:91895600-91896200	Enhancers	Osteobl	bone
26	chr8:91895600-91896400	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr8:91895600-91896600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr8:91895600-91896600	Enhancers	Brain Hippocampus Middle	brain
29	chr8:91895800-91896000	Flanking Active TSS	Liver	Liver
30	chr8:91895800-91896000	Enhancers	Stomach Smooth Muscle	stomach
31	chr8:91895800-91896200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr8:91895800-91896200	Enhancers	HUVEC	blood vessel
33	chr8:91895800-91899800	Weak transcription	NH-A	brain

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