Variant report

Variant	rs10092379
Chromosome Location	chr8:91797768-91797769
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:91795200..91798336-chr8:91807781..91811812,3	MCF-7	breast:
2	chr8:91793459..91795730-chr8:91796509..91798983,2	MCF-7	breast:
3	chr8:91796248..91798729-chr8:91804417..91806000,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10046610	1.00[CEU][hapmap]
rs10046655	1.00[CEU][hapmap]
rs10102274	1.00[CEU][hapmap]
rs10103195	1.00[CEU][hapmap]
rs10504897	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10504899	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504900	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504902	1.00[CHB][hapmap]
rs11986094	1.00[CEU][hapmap]
rs11989315	0.83[AMR][1000 genomes]
rs11994903	1.00[CHB][hapmap]
rs11997330	1.00[CHB][hapmap]
rs12114104	0.82[CHB][hapmap]
rs12114679	1.00[CHB][hapmap]
rs16893366	1.00[CEU][hapmap]
rs16905150	0.80[ASW][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[AMR][1000 genomes]
rs16905310	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905319	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905331	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16905427	1.00[CHB][hapmap]
rs16905437	1.00[CHB][hapmap]
rs17717748	0.95[EUR][1000 genomes]
rs2202392	1.00[CHB][hapmap]
rs4265146	1.00[CEU][hapmap]
rs4339599	1.00[CEU][hapmap]
rs4389891	1.00[CHB][hapmap]
rs4500048	1.00[CEU][hapmap]
rs4571698	1.00[CEU][hapmap]
rs59253454	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60664481	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60690249	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61312544	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61441737	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6984689	0.80[ASW][hapmap];1.00[MEX][hapmap];0.83[TSI][hapmap]
rs6994987	1.00[CEU][hapmap]
rs6999220	0.82[CHB][hapmap]
rs7011031	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7011691	1.00[CEU][hapmap]
rs7013400	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7017072	0.82[CHB][hapmap]
rs7017389	0.83[AMR][1000 genomes]
rs73305518	0.83[AMR][1000 genomes]
rs73307288	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311066	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311068	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311083	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311086	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311089	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73311093	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815900	0.80[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7818878	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7823529	1.00[CEU][hapmap]
rs7838907	1.00[CHB][hapmap]
rs9297885	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028628	chr8:91680968-92418954	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539672	chr8:91680968-92418954	Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1034104	chr8:91723213-91847147	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv539673	chr8:91723213-91847147	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91795200-91801600	Enhancers	Fetal Brain Male	brain
2	chr8:91795600-91800000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr8:91796400-91799800	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr8:91796600-91799600	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr8:91796600-91800600	Weak transcription	Fetal Brain Female	brain
6	chr8:91796600-91800800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr8:91797200-91799000	Enhancers	Brain Substantia Nigra	brain
8	chr8:91797200-91803200	Enhancers	Brain Anterior Caudate	brain
9	chr8:91797400-91798800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr8:91797400-91800200	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:91797600-91797800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:91797600-91798200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr8:91797600-91799000	Enhancers	Brain Angular Gyrus	brain
14	chr8:91797600-91800800	Enhancers	Brain Hippocampus Middle	brain

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