Variant report

Variant	rs10102274
Chromosome Location	chr8:91652087-91652088
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:91650893..91653020-chr8:91682221..91684113,2	K562	blood:
2	chr8:91649798..91652674-chr8:91731114..91733999,2	K562	blood:
3	chr1:78443392..78444979-chr8:91649478..91652346,2	MCF-7	breast:
4	chr8:91625970..91628020-chr8:91651909..91654017,2	MCF-7	breast:
5	chr8:91649829..91653898-chr8:91923286..91927799,5	MCF-7	breast:
6	chr8:91651680..91653672-chr8:91900976..91903680,2	MCF-7	breast:
7	chr8:91651967..91653718-chr8:92080028..92082721,2	MCF-7	breast:
8	chr8:91650303..91653276-chr8:91994300..91997122,2	K562	blood:
9	chr8:91651654..91654414-chr8:91722903..91725467,2	K562	blood:
10	chr8:91650629..91653115-chr8:91682985..91684904,2	MCF-7	breast:
11	chr8:91649928..91652200-chr8:91774063..91776914,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000155100	Chromatin interaction
ENSG00000253738	Chromatin interaction
ENSG00000162616	Chromatin interaction
ENSG00000162613	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10046610	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10046655	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10046723	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10092379	1.00[CEU][hapmap]
rs10103195	1.00[CEU][hapmap];0.82[CHB][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504897	1.00[CEU][hapmap]
rs10504899	1.00[CEU][hapmap]
rs10504900	1.00[CEU][hapmap]
rs11986094	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11989315	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs11994308	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16893366	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16905044	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16905150	0.82[CHB][hapmap];0.91[EUR][1000 genomes]
rs16905331	1.00[CEU][hapmap]
rs28394575	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4265146	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4339599	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4500048	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4571698	1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6471253	1.00[CEU][hapmap]
rs6984689	0.82[CHB][hapmap];0.83[EUR][1000 genomes]
rs6994987	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap];0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7011691	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[YRI][hapmap]
rs7011692	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013400	1.00[CEU][hapmap]
rs7017389	0.91[EUR][1000 genomes]
rs73301574	0.82[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73301578	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73301581	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73301593	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73305518	0.93[EUR][1000 genomes]
rs7815900	1.00[CEU][hapmap]
rs7823529	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9297885	1.00[CEU][hapmap];0.82[CHB][hapmap];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827745	chr8:91623737-91660193	ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:91620400-91652200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr8:91624000-91654800	Weak transcription	Pancreas	Pancrea
3	chr8:91624200-91652200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr8:91629200-91653400	Weak transcription	Ovary	ovary
5	chr8:91629200-91654600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr8:91629600-91654400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr8:91630600-91653600	Weak transcription	Fetal Intestine Small	intestine
8	chr8:91630600-91654200	Weak transcription	HSMMtube	muscle
9	chr8:91630600-91654400	Weak transcription	Fetal Muscle Leg	muscle
10	chr8:91630600-91655000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr8:91630600-91656800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:91630800-91652200	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr8:91630800-91654400	Weak transcription	Fetal Intestine Large	intestine
14	chr8:91631000-91654800	Weak transcription	NH-A	brain
15	chr8:91631200-91654400	Weak transcription	Psoas Muscle	Psoas
16	chr8:91632000-91656800	Weak transcription	Left Ventricle	heart
17	chr8:91632400-91652200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr8:91632800-91654600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:91633200-91652200	Weak transcription	NHLF	lung
20	chr8:91634800-91652200	Weak transcription	Hela-S3	cervix
21	chr8:91637600-91652200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr8:91638200-91654800	Weak transcription	Placenta	Placenta
23	chr8:91640800-91654600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr8:91641000-91654600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr8:91641600-91652200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
26	chr8:91641600-91654800	Weak transcription	Primary T cells from cord blood	blood
27	chr8:91643200-91655400	Weak transcription	Brain Germinal Matrix	brain
28	chr8:91643200-91657200	Weak transcription	Gastric	stomach
29	chr8:91645600-91653800	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr8:91645800-91653200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr8:91645800-91654800	Weak transcription	HSMM	muscle
32	chr8:91646000-91652200	Weak transcription	NHEK	skin
33	chr8:91647400-91652200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
34	chr8:91647800-91656600	Weak transcription	Fetal Muscle Trunk	muscle
35	chr8:91648800-91652600	Enhancers	Brain Hippocampus Middle	brain
36	chr8:91648800-91653600	Enhancers	Brain Inferior Temporal Lobe	brain
37	chr8:91649000-91652200	Enhancers	Breast Myoepithelial Primary Cells	Breast
38	chr8:91649000-91652600	Enhancers	Brain Anterior Caudate	brain
39	chr8:91649000-91653200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr8:91649000-91655600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr8:91649400-91652200	Weak transcription	NHDF-Ad	bronchial
42	chr8:91649600-91652400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr8:91649800-91652200	Weak transcription	Primary hematopoietic stem cells	blood
44	chr8:91650200-91652200	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
45	chr8:91650200-91652400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
46	chr8:91650200-91652400	Enhancers	Brain Substantia Nigra	brain
47	chr8:91650200-91652600	Enhancers	Fetal Heart	heart
48	chr8:91650400-91654000	Weak transcription	Primary B cells from cord blood	blood
49	chr8:91650600-91652200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr8:91650600-91653000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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