Variant report

Variant	rs10092410
Chromosome Location	chr8:58969943-58969944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28603007	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28638177	0.87[AMR][1000 genomes]
rs28711000	0.87[AMR][1000 genomes]
rs28760587	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6999637	0.95[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7011992	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58935600-58988800	Weak transcription	Aorta	Aorta
2	chr8:58952200-58986400	Weak transcription	Adipose Nuclei	Adipose
3	chr8:58952800-58979600	Weak transcription	HSMMtube	muscle
4	chr8:58954400-58973200	Weak transcription	Psoas Muscle	Psoas
5	chr8:58955200-58974400	Weak transcription	Fetal Brain Male	brain
6	chr8:58958000-58979000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr8:58963600-58978400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr8:58963800-58970400	Weak transcription	Esophagus	oesophagus
9	chr8:58963800-58973200	Weak transcription	NHLF	lung
10	chr8:58963800-58978800	Weak transcription	Fetal Muscle Trunk	muscle
11	chr8:58964200-58973400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr8:58964800-58973400	Weak transcription	NHDF-Ad	bronchial
13	chr8:58965200-58973800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:58965400-58974200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr8:58966600-58980000	Weak transcription	Ovary	ovary
16	chr8:58968200-58970000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr8:58968600-58970000	Weak transcription	HepG2	liver
18	chr8:58968800-58981000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:58969000-58971000	Enhancers	Fetal Kidney	kidney
20	chr8:58969000-58971200	Enhancers	Fetal Heart	heart
21	chr8:58969200-58970000	Enhancers	Stomach Smooth Muscle	stomach
22	chr8:58969200-58970200	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr8:58969200-58970600	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr8:58969400-58970000	Enhancers	Lung	lung
25	chr8:58969400-58970000	Enhancers	Right Atrium	heart
26	chr8:58969400-58970200	Enhancers	Right Ventricle	heart
27	chr8:58969400-58970400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr8:58969400-58970400	Enhancers	Brain Germinal Matrix	brain
29	chr8:58969400-58970600	Enhancers	Colon Smooth Muscle	Colon
30	chr8:58969400-58970600	Enhancers	Fetal Lung	lung
31	chr8:58969400-58970600	Enhancers	Fetal Muscle Leg	muscle
32	chr8:58969400-58970600	Genic enhancers	Fetal Stomach	stomach
33	chr8:58969400-58970600	Enhancers	Left Ventricle	heart
34	chr8:58969600-58970000	Enhancers	Fetal Brain Female	brain
35	chr8:58969600-58970000	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr8:58969600-58970400	Enhancers	Brain Substantia Nigra	brain
37	chr8:58969600-58970600	Enhancers	Liver	Liver
38	chr8:58969600-58970600	Enhancers	Pancreas	Pancrea
39	chr8:58969800-58970600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr8:58969800-58973800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr8:58969800-58979800	Weak transcription	HSMM	muscle

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