Variant report

Variant	rs28711000
Chromosome Location	chr8:58988904-58988905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:58980424..58983334-chr8:58985225..58988967,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169122	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10092410	0.87[AMR][1000 genomes]
rs28603007	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28638177	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28760587	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs28815004	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6993589	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs6999637	0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs7011992	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831324	chr8:58844151-59045309	Flanking Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:58979400-58999600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:58980400-58991400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr8:58980400-58994400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr8:58980600-58999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr8:58980800-58989200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr8:58980800-58991600	Weak transcription	Osteobl	bone
7	chr8:58980800-58992000	Weak transcription	Fetal Intestine Small	intestine
8	chr8:58981200-58989600	Weak transcription	NHLF	lung
9	chr8:58983000-58989800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr8:58983400-59003800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr8:58983600-58993400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr8:58983600-59001200	Weak transcription	Fetal Kidney	kidney
13	chr8:58984000-59003600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:58984200-58991600	Weak transcription	NH-A	brain
15	chr8:58984400-58999200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr8:58984600-58989000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr8:58984600-58989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr8:58984600-58989800	Weak transcription	Brain Anterior Caudate	brain
19	chr8:58984600-58991400	Weak transcription	NHDF-Ad	bronchial
20	chr8:58984600-58991800	Weak transcription	Stomach Mucosa	stomach
21	chr8:58984600-58994400	Weak transcription	Brain Angular Gyrus	brain
22	chr8:58984600-59003200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr8:58984600-59004200	Weak transcription	Brain Hippocampus Middle	brain
24	chr8:58984800-58991400	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr8:58984800-58991600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:58984800-58991600	Weak transcription	Pancreas	Pancrea
27	chr8:58986400-58989400	Weak transcription	Fetal Lung	lung
28	chr8:58987000-58989000	Weak transcription	Stomach Smooth Muscle	stomach
29	chr8:58987000-58993200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr8:58987200-58989800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr8:58987400-58989800	Weak transcription	Fetal Brain Male	brain
32	chr8:58987400-58990200	Strong transcription	Fetal Stomach	stomach
33	chr8:58987400-58999200	Weak transcription	Right Atrium	heart
34	chr8:58987400-59003600	Weak transcription	Colon Smooth Muscle	Colon
35	chr8:58987400-59010800	Weak transcription	Psoas Muscle	Psoas
36	chr8:58987800-58990400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr8:58987800-58990600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:58988000-58990400	Strong transcription	Fetal Muscle Trunk	muscle
39	chr8:58988000-58990800	Strong transcription	HSMM	muscle
40	chr8:58988000-58994200	Strong transcription	Fetal Muscle Leg	muscle
41	chr8:58988200-58989000	Weak transcription	Liver	Liver
42	chr8:58988200-58991400	Weak transcription	Fetal Heart	heart
43	chr8:58988400-58989000	Strong transcription	Gastric	stomach
44	chr8:58988400-58989800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr8:58988400-58989800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr8:58988400-58990200	Strong transcription	Brain Germinal Matrix	brain
47	chr8:58988400-58990400	Strong transcription	Fetal Brain Female	brain
48	chr8:58988400-58990400	Strong transcription	Skeletal Muscle Male	skeletal muscle
49	chr8:58988400-58990400	Strong transcription	HSMMtube	muscle
50	chr8:58988400-58993800	Strong transcription	Cortex derived primary cultured neurospheres	brain

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