Variant report

Variant	rs10093116
Chromosome Location	chr8:59707951-59707952
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16923635	1.00[EUR][1000 genomes]
rs16923636	1.00[EUR][1000 genomes]
rs28669287	1.00[EUR][1000 genomes]
rs6471741	1.00[EUR][1000 genomes]
rs6992297	1.00[EUR][1000 genomes]
rs73250352	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59702200-59708400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr8:59704200-59711200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr8:59704400-59710200	Weak transcription	Primary T cells from cord blood	blood
4	chr8:59704400-59710800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59704600-59709000	Weak transcription	Fetal Thymus	thymus
6	chr8:59704600-59710600	Weak transcription	Thymus	Thymus
7	chr8:59704800-59711200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr8:59704800-59712400	Weak transcription	HSMM	muscle
9	chr8:59705000-59708200	Weak transcription	HUVEC	blood vessel
10	chr8:59705000-59709000	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr8:59705000-59712800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:59705000-59712800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:59705000-59713200	Weak transcription	Aorta	Aorta
14	chr8:59705200-59710600	Weak transcription	Dnd41	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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