Variant report

Variant	rs6471741
Chromosome Location	chr8:59626122-59626123
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10093116	1.00[EUR][1000 genomes]
rs16923635	1.00[EUR][1000 genomes]
rs16923636	1.00[EUR][1000 genomes]
rs28669287	1.00[EUR][1000 genomes]
rs60621064	1.00[EUR][1000 genomes]
rs6992297	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73250352	1.00[EUR][1000 genomes]
rs73684343	1.00[EUR][1000 genomes]
rs73684344	1.00[EUR][1000 genomes]
rs73684348	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv831325	chr8:59492580-59694443	Genic enhancers Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv1025575	chr8:59609825-59632135	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59623600-59627800	Weak transcription	Small Intestine	intestine
2	chr8:59625600-59627000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr8:59625600-59628800	Enhancers	Fetal Intestine Large	intestine
4	chr8:59625800-59628200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr8:59626000-59626800	Active TSS	Rectal Mucosa Donor 29	rectum
6	chr8:59626000-59627200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr8:59626000-59629000	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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