Variant report

Variant	rs10093389
Chromosome Location	chr8:69945985-69945986
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:69938259..69942128-chr8:69942869..69947061,5	MCF-7	breast:
2	chr8:69865725..69868693-chr8:69943801..69946153,2	MCF-7	breast:
3	chr8:69762730..69767388-chr8:69943367..69946598,5	MCF-7	breast:
4	chr8:69834950..69836674-chr8:69945837..69947656,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254337	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12549168	0.90[JPT][hapmap]
rs12675576	1.00[JPT][hapmap]
rs16935336	1.00[JPT][hapmap]
rs16935360	0.81[ASN][1000 genomes]
rs16935363	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs1974974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737935	1.00[JPT][hapmap]
rs4737936	0.81[ASN][1000 genomes]
rs6990230	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6999385	0.81[ASN][1000 genomes]
rs6999406	0.81[ASN][1000 genomes]
rs73683801	0.81[ASN][1000 genomes]
rs7825661	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031633	chr8:69766575-70322790	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:69941000-69951600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr8:69941800-69946000	Weak transcription	Aorta	Aorta
3	chr8:69942000-69947200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr8:69942600-69947800	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:69942800-69948000	Enhancers	Osteobl	bone
6	chr8:69943800-69946000	Weak transcription	NHLF	lung
7	chr8:69944000-69953600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr8:69944600-69946000	Weak transcription	NH-A	brain
9	chr8:69945400-69946600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr8:69945400-69946800	Enhancers	Fetal Stomach	stomach
11	chr8:69945600-69946600	Enhancers	Fetal Lung	lung
12	chr8:69945800-69946200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:69945800-69946200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr8:69945800-69946200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr8:69945800-69946200	Enhancers	Ovary	ovary
16	chr8:69945800-69946200	Enhancers	Rectal Smooth Muscle	rectum
17	chr8:69945800-69946200	Genic enhancers	HSMM	muscle
18	chr8:69945800-69946200	Enhancers	NHDF-Ad	bronchial
19	chr8:69945800-69946800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr8:69945800-69946800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr8:69945800-69947200	Enhancers	Colon Smooth Muscle	Colon
22	chr8:69945800-69947400	Enhancers	Hela-S3	cervix

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